PDB: 1081 resultsInfo pagesStatus searchChemie searchBIRD

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3DQO	Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 2: Structure 2 in a Series of 26 High Pressure Structures Descriptor: Green fluorescent protein Authors: Barstow, B, Kim, C.U. Deposit date: 2008-07-09 Release date: 2008-09-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proc.Natl.Acad.Sci.Usa, 105, 2008
7QGK	The mRubyFT protein, Genetically Encoded Blue-to-Red Fluorescent Timer in its red state Descriptor: MAGNESIUM ION, The red form of the mRubyFT protein, Genetically Encoded Blue-to-Red Fluorescent Timer Authors: Boyko, K.M, Nikolaeva, A.Y, Gaivoronskii, F.A, Vlaskina, A.V, Subach, O.M, Popov, V.O, Subach, F.V. Deposit date: 2021-12-08 Release date: 2022-03-23 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.5 Å) Cite: The mRubyFT Protein, Genetically Encoded Blue-to-Red Fluorescent Timer. Int J Mol Sci, 23, 2022
3DPX	Structure of the Yellow Fluorescent Protein Citrine Frozen at 5000 Atmospheres: Structure 26 in a Series of 26 High Pressure Structures Descriptor: Green fluorescent protein Authors: Barstow, B, Kim, C.U. Deposit date: 2008-07-09 Release date: 2008-09-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proc.Natl.Acad.Sci.Usa, 105, 2008
3DQ5	Structure of the Yellow Fluorescent Protein Citrine Frozen at 1960 Atmospheres: Structure 19 in a Series of 26 High Pressure Structures Descriptor: Green fluorescent protein Authors: Barstow, B, Kim, C.U. Deposit date: 2008-07-09 Release date: 2008-09-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proc.Natl.Acad.Sci.Usa, 105, 2008
1KYR	Crystal Structure of a Cu-bound Green Fluorescent Protein Zn Biosensor Descriptor: COPPER (II) ION, Green Fluorescent Protein, MAGNESIUM ION Authors: Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2002-02-05 Release date: 2002-04-10 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural chemistry of a green fluorescent protein Zn biosensor. J.Am.Chem.Soc., 124, 2002
1QYF	Crystal structure of matured green fluorescent protein R96A variant Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, green-fluorescent protein Authors: Barondeau, D.P, Putnam, C.D, Kassmann, C.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2003-09-10 Release date: 2003-09-30 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures. Proc.Natl.Acad.Sci.Usa, 100, 2003
7QLN	rsKiiro pump probe structure by TR-SFX Descriptor: rsKiiro Authors: van Thor, J.J. Deposit date: 2021-12-20 Release date: 2023-10-18 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Optical control of ultrafast structural dynamics in a fluorescent protein. Nat.Chem., 15, 2023
6GP0	Structure of mEos4b in the red fluorescent state Descriptor: Green to red photoconvertible GFP-like protein EosFP Authors: De Zitter, E, Adam, V, Byrdin, M, Van Meervelt, L, Dedecker, P, Bourgeois, D. Deposit date: 2018-06-04 Release date: 2019-05-22 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Mechanistic investigation of mEos4b reveals a strategy to reduce track interruptions in sptPALM. Nat.Methods, 16, 2019
3KCS	Crystal structure of PAmCherry1 in the dark state Descriptor: PAmCherry1 protein Authors: Malashkevich, V.N, Subach, F.V, Zencheck, W.D, Xiao, H, Filonov, G.S, Almo, S.C, Verkhusha, V.V. Deposit date: 2009-10-21 Release date: 2009-11-17 Last modified: 2018-01-24 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Photoactivation mechanism of PAmCherry based on crystal structures of the protein in the dark and fluorescent states. Proc.Natl.Acad.Sci.USA, 106, 2009
1H6R	The oxidized state of a redox sensitive variant of green fluorescent protein Descriptor: CHLORIDE ION, GREEN FLUORESCENT PROTEIN Authors: Ostergaard, H, Henriksen, A, Hansen, F.G, Winther, J.R. Deposit date: 2001-06-22 Release date: 2001-11-15 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Shedding Light on Disulfide Bond Formation: Engineering a Redox Switch in Green Fluorescent Protein Embo J., 20, 2001
2QRF	Green Fluorescent Protein: Cyclized-only Intermediate of Chromophore Maturation in the Q183E variant Descriptor: 1,2-ETHANEDIOL, Green fluorescent protein, MAGNESIUM ION Authors: Wood, T.I, Barondeau, D.P, Hitomi, C, Tainer, J.A, Getzoff, E.D. Deposit date: 2007-07-28 Release date: 2009-04-21 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Green Fluorescent Protein Chromophore - Cyclized Intermediate To be Published
4P1Q	GREEN FLUORESCENT PROTEIN E222H VARIANT Descriptor: Green fluorescent protein, SODIUM ION Authors: Klein, M, Carius, Y, Auerbach, D, Franz, S, Jung, G, Lancaster, C.R.D. Deposit date: 2014-02-27 Release date: 2014-07-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Replacement of Highly Conserved E222 by the Photostable Non-photoconvertible Histidine in GFP. Chembiochem, 15, 2014
3W1D	Structure of a pressure sensitive YFP variant YFP-G3 Descriptor: Green Fluorescent protein Authors: Imada, K, Yoshizawa, K, Kinoshita, M, Watanabe, T.M. Deposit date: 2012-11-14 Release date: 2013-10-02 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Glycine insertion makes yellow fluorescent protein sensitive to hydrostatic pressure. Plos One, 8, 2013
2DUF	crystal structure of a green fluorescent protein variant S65T/H148D at pH 5.6 Descriptor: Green fluorescent protein Authors: Shu, X, Remington, S.J. Deposit date: 2006-07-23 Release date: 2007-07-10 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Ultrafast excited-state dynamics in the green fluorescent protein variant S65T/H148D. 1. Mutagenesis and structural studies. Biochemistry, 46, 2007
1YHH	Uncyclized precursor structure of S65A Y66S G67A GFP variant Descriptor: green fluorescent protein Authors: Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2005-01-07 Release date: 2005-02-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry. Biochemistry, 44, 2005
2RH7	Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla Reniformis Descriptor: Green fluorescent protein Authors: Loening, A.M, Fenn, T.D, Gambhir, S.S. Deposit date: 2007-10-06 Release date: 2007-10-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla reniformis. J.Mol.Biol., 374, 2007
1S6Z	Enhanced Green Fluorescent Protein Containing the Y66L Substitution Descriptor: CHLORIDE ION, green fluorescent protein Authors: Rosenow, M.A, Huffman, H.A, Phail, M.E, Wachter, R.M. Deposit date: 2004-01-28 Release date: 2004-05-04 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: The Crystal Structure of the Y66L Variant of Green Fluorescent Protein Supports a Cyclization-Oxidation-Dehydration Mechanism for Chromophore Maturation(,). Biochemistry, 43, 2004
1YJ2	Cyclized, non-dehydrated post-translational product for S65A Y66S H148G GFP variant Descriptor: 1,2-ETHANEDIOL, Green Fluorescent Protein, MAGNESIUM ION Authors: Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2005-01-13 Release date: 2005-02-15 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry. Biochemistry, 44, 2005
3LVA	Crystal structure of colorless GFP-like protein from Aequorea coerulescens Descriptor: GLYCEROL, Green fluorescent protein, SULFATE ION Authors: Pletneva, N.V, Pletnev, V.Z, Pletnev, S.V. Deposit date: 2010-02-19 Release date: 2010-03-09 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural evidence for a dehydrated intermediate in green fluorescent protein chromophore biosynthesis. J.Biol.Chem., 285, 2010
1Z1Q	Y66L Variant of Enhanced Green Fluorescent Protein with 374-nm Absorbing Chromophore Descriptor: Green Fluorescent Protein, SODIUM ION Authors: Rosenow, M.A, Patel, H.N, Wachter, R.M. Deposit date: 2005-03-04 Release date: 2005-06-21 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Oxidative Chemistry in the GFP Active Site Leads to Covalent Cross-Linking of a Modified Leucine Side Chain with a Histidine Imidazole: Implications for the Mechanism of Chromophore Formation. Biochemistry, 44, 2005
3CD9	Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments Descriptor: Green fluorescent protein Authors: Lohman, J.R. Deposit date: 2008-02-26 Release date: 2008-08-19 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (1.502 Å) Cite: Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments Biochemistry, 47, 2008
6GP1	Structure of mEos4b in the red long-lived dark state Descriptor: Green to red photoconvertible GFP-like protein EosFP Authors: De Zitter, E, Adam, V, Byrdin, M, Van Meervelt, L, Dedecker, P, Bourgeois, D. Deposit date: 2018-06-04 Release date: 2019-05-22 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.504 Å) Cite: Mechanistic investigation of mEos4b reveals a strategy to reduce track interruptions in sptPALM. Nat.Methods, 16, 2019
6HOJ	Structure of Beclin1 LIR motif bound to GABARAP Descriptor: 1,2-ETHANEDIOL, Beclin-1,Gamma-aminobutyric acid receptor-associated protein, SULFATE ION Authors: Mouilleron, S, Birgisdottir, A.B, Bhujbal, Z, Wirth, M, Sjottem, E, Evjen, G, Zhang, W, Lee, R, O'Reilly, N, Tooze, S, Lamark, T, Johansen, T. Deposit date: 2018-09-17 Release date: 2019-02-27 Last modified: 2019-07-10 Method: X-RAY DIFFRACTION (1.51 Å) Cite: Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs. Autophagy, 15, 2019
5OQ9	XFEL structure of the off state of a reversibly photoswitching fluorescent protein determined using the droplet on demand injection method Descriptor: Green to red photoconvertible GFP-like protein EosFP Authors: Hutchison, C.D.M, Cordon-Preciado, V, Morgan, R.M.L, van Thor, J.J. Deposit date: 2017-08-11 Release date: 2017-12-06 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.51 Å) Cite: X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature. Int J Mol Sci, 18, 2017
6PFR	rsEGFP2 with a chlorinated chromophore in the fluorescent on-state Descriptor: Green fluorescent protein Authors: Chang, J, Romei, M.G, Boxer, S.G. Deposit date: 2019-06-22 Release date: 2019-08-07 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.51 Å) Cite: Structural Evidence of Photoisomerization Pathways in Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019

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