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4Q9R
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BU of 4q9r by Molmil
Crystal structure of an RNA aptamer bound to trifluoroethyl-ligand analog in complex with Fab
分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Fab BL3-6, HEAVY CHAIN, ...
著者Huang, H, Suslov, N.B, Li, N.-S, Shelke, S.A, Evans, M.E, Koldobskaya, Y, Rice, P.A, Piccirilli, J.A.
登録日2014-05-01
公開日2014-06-18
最終更新日2017-07-26
実験手法X-RAY DIFFRACTION (3.12 Å)
主引用文献A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore.
Nat.Chem.Biol., 10, 2014
7RRH
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BU of 7rrh by Molmil
Crystal structure of fast switching R66M/M159T mutant of fluorescent protein Dronpa (Dronpa2)
分子名称: Fluorescent protein Dronpa
著者Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
登録日2021-08-09
公開日2021-10-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.747 Å)
主引用文献Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme.
J.Am.Chem.Soc., 144, 2022
7RRK
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BU of 7rrk by Molmil
Crystal structure of fast switching M159E mutant of fluorescent protein Dronpa (Dronpa2)
分子名称: Fluorescent protein Dronpa
著者Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
登録日2021-08-09
公開日2021-10-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.929 Å)
主引用文献Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme.
J.Am.Chem.Soc., 144, 2022
7RRI
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BU of 7rri by Molmil
Crystal structure of fast switching S142A/M159T mutant of fluorescent protein Dronpa (Dronpa2)
分子名称: Fluorescent protein Dronpa
著者Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
登録日2021-08-09
公開日2021-10-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.643 Å)
主引用文献Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme.
J.Am.Chem.Soc., 144, 2022
7RRJ
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BU of 7rrj by Molmil
Crystal structure of fast switching M159Q mutant of fluorescent protein Dronpa (Dronpa2)
分子名称: Fluorescent protein Dronpa
著者Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
登録日2021-08-09
公開日2021-10-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme.
J.Am.Chem.Soc., 144, 2022
6RUM
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BU of 6rum by Molmil
Crystal structure of GFP-LAMA-G97 - a GFP enhancer nanobody with cpDHFR insertion and TMP and NADPH
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GFP-LAMA-G97 a GFP enhancer nanobody with cpDHFR insertion, ...
著者Farrants, H, Tarnawski, M, Mueller, T.G, Otsuka, S, Hiblot, J, Koch, B, Kueblbeck, M, Kraeusslich, H.-G, Ellenberg, J, Johnsson, K.
登録日2019-05-28
公開日2020-02-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Chemogenetic Control of Nanobodies.
Nat.Methods, 17, 2020
6OFN
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BU of 6ofn by Molmil
Crystal structure of green fluorescent protein (GFP); S65T, T203(3-OMeY); ih circular permutant (50-51)
分子名称: Green fluorescent protein (GFP); S65T, T203(3-OMeY); ih circular permutant (50-51)
著者Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
登録日2019-03-31
公開日2019-07-10
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.649 Å)
主引用文献Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins.
J.Am.Chem.Soc., 141, 2019
6OFO
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BU of 6ofo by Molmil
Crystal structure of split green fluorescent protein (GFP); s10 circular permutant (194-195)
分子名称: Green fluorescent protein (GFP); s10 circular permutant (194-195)
著者Lin, C.-Y, Romei, M.G, Deller, M.C, Doukov, T.I, Boxer, S.G.
登録日2019-03-31
公開日2019-07-10
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.603 Å)
主引用文献Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins.
J.Am.Chem.Soc., 141, 2019
6OFL
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BU of 6ofl by Molmil
Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-ClY); ih circular permutant (50-51)
分子名称: Green fluorescent protein (GFP); S65T, Y66(3-ClY); ih circular permutant (50-51)
著者Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
登録日2019-03-31
公開日2019-07-10
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins.
J.Am.Chem.Soc., 141, 2019
2ZO7
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BU of 2zo7 by Molmil
Crystal Structure of a Kusabira-Cyan Mutant (KCY-R1), a Cyan/Green-Emitting GFP-Like Protein
分子名称: CYAN/GREEN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN MUTANT (KCY-R1)
著者Kikuchi, A, Fukumura, E, Karasawa, S, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-05-06
公開日2009-05-12
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Crystal structure of a new cyan fluorescent protein and its hue-shifted variants
Biochemistry, 48, 2009
2ZO6
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BU of 2zo6 by Molmil
Crystal Structure of Kusabira-Cyan (KCY), a Cyan-Emitting GFP-Like Protein
分子名称: CYAN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN (KCY)
著者Kikuchi, A, Fukumura, E, Karasawa, S, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-05-06
公開日2009-05-12
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal structure of a new cyan fluorescent protein and its hue-shifted variants
Biochemistry, 48, 2009
6MWQ
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BU of 6mwq by Molmil
Single particle cryoEM structure of a DARPin-aldolase platform in complex with GFP
分子名称: DARPin, Muscle-type aldolase chimeric fusion, Green fluorescent protein
著者Weaver, S.J, Yao, Q.
登録日2018-10-30
公開日2018-11-21
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Fusion of DARPin to Aldolase Enables Visualization of Small Protein by Cryo-EM.
Structure, 27, 2019
6OFM
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BU of 6ofm by Molmil
Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-CH3Y); ih circular permutant (50-51)
分子名称: Green fluorescent protein (GFP); S65T, Y66(3-CH3Y); ih circular permutant (50-51)
著者Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
登録日2019-03-31
公開日2019-07-10
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins.
J.Am.Chem.Soc., 141, 2019
6OFK
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BU of 6ofk by Molmil
Crystal structure of green fluorescent protein (GFP); S65T; ih circular permutant (50-51)
分子名称: ACETATE ION, Green Fluorescent Protein (GFP); S65T; ih circular permutant (50-51)
著者Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
登録日2019-03-30
公開日2019-07-10
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins.
J.Am.Chem.Soc., 141, 2019
3MGF
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BU of 3mgf by Molmil
Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5
分子名称: Fluorescent protein
著者Ebisawa, T, Yamamura, A, Ohtsuka, J, Kameda, Y, Hayakawa, K, Nagata, K, Tanokura, M.
登録日2010-04-06
公開日2011-03-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5
To be Published
6NHV
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BU of 6nhv by Molmil
Single particle reconstruction of DARPin and its bound GFP on a symmetric scaffold
分子名称: DARP14 - Subunit B, Subunit A-DARPin, superfolder GFP
著者Liu, Y, Huynh, D, Yeates, T.O.
登録日2018-12-24
公開日2019-05-08
最終更新日2019-11-27
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献A 3.8 angstrom resolution cryo-EM structure of a small protein bound to an imaging scaffold.
Nat Commun, 10, 2019
6H01
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BU of 6h01 by Molmil
Crystal structure of a domain-swapped dark-state sfGFP containing the unnatural amino acid ortho-nitrobenzyl-tyrosine (ONBY) at residue 66
分子名称: Green fluorescent protein
著者Kesgin-Schaefer, S, Tidow, H.
登録日2018-07-06
公開日2019-04-24
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.776 Å)
主引用文献Crystal structure of a domain-swapped photoactivatable sfGFP variant provides evidence for GFP folding pathway.
Febs J., 286, 2019
1Z1Q
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BU of 1z1q by Molmil
Y66L Variant of Enhanced Green Fluorescent Protein with 374-nm Absorbing Chromophore
分子名称: Green Fluorescent Protein, SODIUM ION
著者Rosenow, M.A, Patel, H.N, Wachter, R.M.
登録日2005-03-04
公開日2005-06-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Oxidative Chemistry in the GFP Active Site Leads to Covalent Cross-Linking of a Modified Leucine Side Chain with a Histidine Imidazole: Implications for the Mechanism of Chromophore Formation.
Biochemistry, 44, 2005
1Z1P
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BU of 1z1p by Molmil
Y66L variant of Enhanced Green Fluorescent Protein with 412-nm Absorbing Chromophore
分子名称: green fluorescent protein
著者Rosenow, M.A, Patel, H.N, Wachter, R.M.
登録日2005-03-04
公開日2005-06-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Oxidative Chemistry in the GFP Active Site Leads to Covalent Cross-Linking of a Modified Leucine Side Chain with a Histidine Imidazole: Implications for the Mechanism of Chromophore Formation.
Biochemistry, 44, 2005
3KPX
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BU of 3kpx by Molmil
Crystal Structure Analysis of photoprotein clytin
分子名称: Apophotoprotein clytin-3, C2-HYDROPEROXY-COELENTERAZINE, CALCIUM ION
著者Titushin, M.S, Li, Y, Stepanyuk, G.A, Wang, B.-C, Lee, J, Vysotski, E.S, Liu, Z.-J.
登録日2009-11-17
公開日2010-10-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.899 Å)
主引用文献NMR derived topology of a GFP-photoprotein energy transfer complex
J.Biol.Chem., 285, 2010
8FI2
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BU of 8fi2 by Molmil
Structure of Lettuce C20T bound to DFHBI-1T
分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ...
著者Passalacqua, L.F.M, Ferre-D'Amare, A.R.
登録日2022-12-15
公開日2023-05-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Intricate 3D architecture of a DNA mimic of GFP.
Nature, 618, 2023
8FI0
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BU of 8fi0 by Molmil
Structure of Lettuce aptamer bound to DFAME
分子名称: Lettuce DNA aptamer, MAGNESIUM ION, POTASSIUM ION, ...
著者Passalacqua, L.F.M, Ferre-D'Amare, A.R.
登録日2022-12-15
公開日2023-05-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Intricate 3D architecture of a DNA mimic of GFP.
Nature, 618, 2023
8FHZ
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BU of 8fhz by Molmil
Structure of Lettuce aptamer bound to DFHO
分子名称: (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ...
著者Passalacqua, L.F.M, Ferre-D'Amare, A.R.
登録日2022-12-15
公開日2023-05-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Intricate 3D architecture of a DNA mimic of GFP.
Nature, 618, 2023
8FI8
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BU of 8fi8 by Molmil
Structure of Lettuce C20T bound to DFAME
分子名称: Lettuce DNA aptamer, MAGNESIUM ION, POTASSIUM ION, ...
著者Passalacqua, L.F.M, Ferre-D'Amare, A.R.
登録日2022-12-15
公開日2023-05-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Intricate 3D architecture of a DNA mimic of GFP.
Nature, 618, 2023
8FHV
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BU of 8fhv by Molmil
Structure of Lettuce aptamer bound to DFHBI-1T with thallium I ions
分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ...
著者Passalacqua, L.F.M, Ferre-D'Amare, A.R.
登録日2022-12-15
公開日2023-05-10
最終更新日2023-07-05
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Intricate 3D architecture of a DNA mimic of GFP.
Nature, 618, 2023

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