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2KD7
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BU of 2kd7 by Molmil
Solution NMR structure of F5/8 type C-terminal domain of a putative chitobiase from Bacteroides thetaiotaomicron. Northeast Structural Genomics Consortium target BtR324B
Descriptor: Putative chitobiase
Authors:Eletsky, A, Mills, J.L, Lee, H, Lee, D, Jiang, M, Ciccosanti, C, Xiao, R, Nair, R, Everett, J.K, Swapna, G.V.T, Acton, T.B, Rost, B, Montelione, G.T, Prestegard, J.H, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-01-04
Release date:2009-02-03
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:Solution NMR structure of F5/8 type C-terminal domain of a putative chitobiase from Bacteroides thetaiotaomicron.
To be Published
2QQJ
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BU of 2qqj by Molmil
Crystal Structure of the b1b2 Domains from Human Neuropilin-2
Descriptor: GLYCEROL, Neuropilin-2
Authors:Appleton, B.A, Wiesmann, C.
Deposit date:2007-07-26
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural studies of neuropilin/antibody complexes provide insights into semaphorin and VEGF binding
Embo J., 26, 2007
2LS6
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BU of 2ls6 by Molmil
Solution NMR Structure of a Non-canonical galactose-binding CBM32 from Clostridium perfringens
Descriptor: Hyaluronoglucosaminidase
Authors:Grondin, J.M, Chitayat, S, Ficko-Blean, E, Boraston, A.B, Smith, S.P.
Deposit date:2012-04-20
Release date:2013-05-01
Last modified:2014-02-12
Method:SOLUTION NMR
Cite:An unusual mode of galactose recognition by a family 32 carbohydrate-binding module.
J.Mol.Biol., 426, 2014
2RVA
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BU of 2rva by Molmil
Solution structure of chitosan-binding module 2 derived from chitosanase/glucanase from Paenibacillus sp. IK-5
Descriptor: Glucanase
Authors:Shinya, S, Nishimura, S, Fukamizo, T.
Deposit date:2015-05-13
Release date:2016-04-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase.
Biochem.J., 473, 2016
2RV9
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BU of 2rv9 by Molmil
Solution structure of chitosan-binding module 1 derived from chitosanase/glucanase from Paenibacillus sp. IK-5
Descriptor: Glucanase
Authors:Shinya, S, Nishimura, S, Fukamizo, T.
Deposit date:2015-05-12
Release date:2016-04-06
Last modified:2022-08-24
Method:SOLUTION NMR
Cite:Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase.
Biochem.J., 473, 2016
2V72
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BU of 2v72 by Molmil
The structure of the family 32 CBM from C. perfringens NanJ in complex with galactose
Descriptor: CALCIUM ION, EXO-ALPHA-SIALIDASE, beta-D-galactopyranose
Authors:Boraston, A.B, Ficko-Blean, E, Healey, M.
Deposit date:2007-07-25
Release date:2007-08-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Carbohydrate Recognition by a Large Sialidase Toxin from Clostridium Perfringens.
Biochemistry, 46, 2007
2W1U
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BU of 2w1u by Molmil
A family 32 carbohydrate-binding module, from the Mu toxin produced by Clostridium perfringens, in complex with beta-D-glcNAc-beta(1,3) galNAc
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, ACETATE ION, ...
Authors:Ficko-Blean, E, Boraston, A.B.
Deposit date:2008-10-20
Release date:2009-05-05
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh.
J.Mol.Biol., 390, 2009
2W1Q
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BU of 2w1q by Molmil
Unique ligand binding specificity for a family 32 Carbohydrate- Binding Module from the Mu toxin produced by Clostridium perfringens
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, HYALURONOGLUCOSAMINIDASE, ...
Authors:Ficko-Blean, E, Boraston, A.B.
Deposit date:2008-10-20
Release date:2009-05-05
Last modified:2019-10-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh.
J.Mol.Biol., 390, 2009
2W1S
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BU of 2w1s by Molmil
Unique ligand binding specificity of a family 32 Carbohydrate-Binding Module from the Mu toxin produced by Clostridium perfringens
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, HYALURONOGLUCOSAMINIDASE, ...
Authors:Ficko-Blean, E, Boraston, A.B.
Deposit date:2008-10-20
Release date:2009-05-05
Last modified:2019-10-23
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh.
J.Mol.Biol., 390, 2009
2WDB
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BU of 2wdb by Molmil
A family 32 carbohydrate-binding module, from the Mu toxin produced by Clostridium perfringens, in complex with beta-D-glcNAc-beta(1,2) mannose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose, CALCIUM ION, HYALURONOGLUCOSAMINIDASE
Authors:Ficko-Blean, E, Boraston, A.B.
Deposit date:2009-03-23
Release date:2009-05-05
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh.
J.Mol.Biol., 390, 2009
2WUH
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BU of 2wuh by Molmil
Crystal structure of the DDR2 discoidin domain bound to a triple- helical collagen peptide
Descriptor: COLLAGEN PEPTIDE, DISCOIDIN DOMAIN RECEPTOR 2
Authors:Carafoli, F, Bihan, D, Stathopoulos, S, Konitsiotis, A.D, Kvansakul, M, Farndale, R.W, Leitinger, B, Hohenester, E.
Deposit date:2009-10-05
Release date:2009-12-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic Insight Into Collagen Recognition by Discoidin Domain Receptor 2
Structure, 17, 2009
2Z4F
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BU of 2z4f by Molmil
Solution structure of the Discoidin Domain of DDR2
Descriptor: Discoidin domain-containing receptor 2
Authors:Ichikawa, O, Osawa, M, Nishida, N, Goshima, N, Nomura, N, Shimada, I.
Deposit date:2007-06-16
Release date:2007-09-04
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structural basis of the collagen-binding mode of discoidin domain receptor 2
Embo J., 26, 2007
6XLT
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BU of 6xlt by Molmil
The 1.48 Angstrom crystal structure of evolved galactose oxidase variant A3.E7
Descriptor: ACETATE ION, CALCIUM ION, COPPER (II) ION, ...
Authors:Liu, A, Li, J.
Deposit date:2020-06-29
Release date:2021-02-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.478 Å)
Cite:Formation of Monofluorinated Radical Cofactor in Galactose Oxidase through Copper-Mediated C-F Bond Scission.
J.Am.Chem.Soc., 142, 2020
5XNR
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BU of 5xnr by Molmil
Truncated AlyQ with CBM32 and alginate lyase domains
Descriptor: ACETATE ION, AlyQ, CALCIUM ION, ...
Authors:Teh, A.H, Sim, P.F.
Deposit date:2017-05-24
Release date:2018-06-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Functional and Structural Studies of a Multidomain Alginate Lyase from Persicobacter sp. CCB-QB2.
Sci Rep, 7, 2017
1SDD
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BU of 1sdd by Molmil
Crystal Structure of Bovine Factor Vai
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, COPPER (II) ION, ...
Authors:Adams, T.E, Hockin, M.F, Mann, K.G, Everse, S.J.
Deposit date:2004-02-13
Release date:2004-06-29
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure of activated protein C-inactivated bovine factor Va: Implications for cofactor function.
Proc.Natl.Acad.Sci.USA, 101, 2004
8AYR
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BU of 8ayr by Molmil
Sialidases and Fucosidases of Akkermansia muciniphila are key for rapid growth on colonic mucin and nutrient sharing amongst mucin-associated human gut microbiota
Descriptor: CALCIUM ION, Coagulation factor 5/8 type domain protein
Authors:Sakanaka, H, Nielsen, T.S, Pichler, M.J, Nordberg Karlsson, E, Abou Hachem, M, Morth, J.P.
Deposit date:2022-09-02
Release date:2023-03-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Sialidases and fucosidases of Akkermansia muciniphila are crucial for growth on mucin and nutrient sharing with mucus-associated gut bacteria.
Nat Commun, 14, 2023
8TN9
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BU of 8tn9 by Molmil
Structural architecture of the acidic region of the B domain of coagulation factor V
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Coagulation factor V
Authors:Mohammed, B.M, Basore, K, Summers, B, Pelc, L.A, Di Cera, E.
Deposit date:2023-08-01
Release date:2023-10-04
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Structural architecture of the acidic region of the B domain of coagulation factor V.
J.Thromb.Haemost., 22, 2024
8FDG
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BU of 8fdg by Molmil
Cryo-EM structure of coagulation factor V short
Descriptor: Coagulation factor V
Authors:Mohammed, B.M, Pelc, L.A, Rau, M.J, Di Cera, E.
Deposit date:2022-12-03
Release date:2023-03-15
Last modified:2023-07-12
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of coagulation factor V short.
Blood, 141, 2023
3MO4
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BU of 3mo4 by Molmil
The crystal structure of an alpha-(1-3,4)-fucosidase from Bifidobacterium longum subsp. infantis ATCC 15697
Descriptor: Alpha-1,3/4-fucosidase, FORMIC ACID, TYROSINE
Authors:Tan, K, Xu, X, Cui, H, Ng, J, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-04-22
Release date:2010-05-12
Last modified:2012-10-10
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Bifidobacterium longum subsp. infantis ATCC 15697 alpha-fucosidases are active on fucosylated human milk oligosaccharides.
Appl.Environ.Microbiol., 78, 2012
8C5G
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BU of 8c5g by Molmil
Structure of human Neuropilin-1 b1b2 domains in complex with Chlorotoxin (Leiurus quinquestriatus)
Descriptor: Chlorotoxin, Neuropilin-1
Authors:Boros, E, Ecsedi, P, Szakacs, D, Nyitray, L.
Deposit date:2023-01-09
Release date:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of human Neuropilin-1 b1b2 domains in complex with Chlorotoxin (Leiurus quinquestriatus)
To Be Published
3UES
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BU of 3ues by Molmil
Crystal structure of alpha-1,3/4-fucosidase from Bifidobacterium longum subsp. infantis complexed with deoxyfuconojirimycin
Descriptor: (2S,3R,4S,5R)-2-METHYLPIPERIDINE-3,4,5-TRIOL, 1,2-ETHANEDIOL, Alpha-1,3/4-fucosidase, ...
Authors:Sakurama, H, Fushinobu, S, Yoshida, E, Honda, Y, Hidaka, M, Ashida, H, Kitaoka, M, Katayama, T, Yamamoto, K, Kumagai, H.
Deposit date:2011-10-31
Release date:2012-04-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:1,3-1,4-alpha-L-fucosynthase that specifically introduces Lewis a/x antigens into type-1/2 chains
J.Biol.Chem., 287, 2012
3UET
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BU of 3uet by Molmil
Crystal structure of alpha-1,3/4-fucosidase from Bifidobacterium longum subsp. infantis D172A/E217A mutant complexed with lacto-N-fucopentaose II
Descriptor: 1,2-ETHANEDIOL, Alpha-1,3/4-fucosidase, SODIUM ION, ...
Authors:Sakurama, H, Fushinobu, S, Yoshida, E, Honda, Y, Hidaka, M, Ashida, H, Kitaoka, M, Katayama, T, Yamamoto, K, Kumagai, H.
Deposit date:2011-10-31
Release date:2012-04-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:1,3-1,4-alpha-L-fucosynthase that specifically introduces Lewis a/x antigens into type-1/2 chains
J.Biol.Chem., 287, 2012
6MF2
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BU of 6mf2 by Molmil
Improved Model of Human Coagulation Factor VIII
Descriptor: CALCIUM ION, COPPER (I) ION, Coagulation factor VIII, ...
Authors:Smith, I.W, Spiegel, P.C.
Deposit date:2018-09-08
Release date:2019-09-11
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.609364 Å)
Cite:The 3.2 angstrom structure of a bioengineered variant of blood coagulation factor VIII indicates two conformations of the C2 domain.
J.Thromb.Haemost., 18, 2020
7W12
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BU of 7w12 by Molmil
Complex structure of alginate lyase AlyB-OU02 with G9
Descriptor: Alginate lyase, SULFATE ION, alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid
Authors:Liu, W.Z, Lyu, Q.Q, Zhang, K.K.
Deposit date:2021-11-19
Release date:2022-11-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Determination of oligosaccharide product distributions of PL7 alginate lyases by their structural elements.
Commun Biol, 5, 2022
6EON
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BU of 6eon by Molmil
Galactanase BT0290
Descriptor: Beta-galactosidase, CALCIUM ION, alpha-D-galactopyranose
Authors:Basle, A, Munoz, J, Gilbert, H.
Deposit date:2017-10-10
Release date:2017-11-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018

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