PDB: 109 resultsInfo pagesStatus searchChemie searchBIRD

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2L1B	Solution NMR structure of the chromobox protein Cbx7 with H3K27me3 Descriptor: Chromobox protein homolog 7, Histone H3 Authors: Kaustov, L, Lemak, A, Fares, C, Gutmanas, A, Muhandiram, R, Quang, H, Loppnau, P, Min, J, Edwards, A, Arrowsmith, C, Structural Genomics Consortium (SGC) Deposit date: 2010-07-27 Release date: 2010-08-25 Last modified: 2020-02-05 Method: SOLUTION NMR Cite: Recognition and specificity determinants of the human cbx chromodomains. J.Biol.Chem., 286, 2011
2MJ8	Solution structure of CDYL2 chromodomain Descriptor: Chromodomain Y-like protein 2 Authors: Qin, S, Houliston, S, Arrowsmith, C.H, Edwards, A.M, Wu, H, Min, J, Structural Genomics Consortium (SGC) Deposit date: 2013-12-28 Release date: 2014-04-23 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Structural Basis for the Binding Selectivity of Human CDY Chromodomains. Cell Chem Biol, 27, 2020
2M2L	Solution structure of Entamoeba histolytica HP1 chromodomain Descriptor: Putative uncharacterized protein Authors: Wiggins, K.R, Ren, X, Ali, I.K.M, Petri, W.A, Khorasanizadeh, S. Deposit date: 2012-12-28 Release date: 2014-05-14 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Characterization of putative readers of epigenetic methyl-marks from Entamoeba histolytica To be Published
2B2W	Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 Descriptor: Chromodomain-helicase-DNA-binding protein 1, Histone H3 Authors: Flanagan IV, J.F, Mi, L.-Z, Chruszcz, M, Cymborowski, M, Clines, K.L, Kim, Y, Minor, W, Rastinejad, F, Khorasanizadeh, S. Deposit date: 2005-09-19 Release date: 2005-12-27 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Double chromodomains cooperate to recognize the methylated histone H3 tail. Nature, 438, 2005
2B2T	Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and phosphothreonine 3 Descriptor: Chromodomain-helicase-DNA-binding protein 1, Histone H3 tail Authors: Flanagan IV, J.F, Mi, L.-Z, Chruszcz, M, Cymborowski, M, Clines, K.L, Kim, Y, Minor, W, Rastinejad, F, Khorasanizadeh, S. Deposit date: 2005-09-19 Release date: 2005-12-27 Last modified: 2022-04-13 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Double chromodomains cooperate to recognize the methylated histone H3 tail. Nature, 438, 2005
2B2Y	Tandem chromodomains of human CHD1 Descriptor: Chromodomain-helicase-DNA-binding protein 1 Authors: Flanagan IV, J.F, Mi, L.-Z, Chruszcz, M, Cymborowski, M, Clines, K.L, Kim, Y, Minor, W, Rastinejad, F, Khorasanizadeh, S. Deposit date: 2005-09-19 Release date: 2005-12-27 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Double chromodomains cooperate to recognize the methylated histone H3 tail. Nature, 438, 2005
2B2V	Crystal structure analysis of human CHD1 chromodomains 1 and 2 bound to histone H3 resi 1-15 MeK4 Descriptor: Chromodomain-helicase-DNA-binding protein 1, Histone H3 Authors: Flanagan IV, J.F, Mi, L.-Z, Chruszcz, M, Cymborowski, M, Clines, K.L, Kim, Y, Minor, W, Rastinejad, F, Khorasanizadeh, S. Deposit date: 2005-09-19 Release date: 2005-12-27 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Double chromodomains cooperate to recognize the methylated histone H3 tail. Nature, 438, 2005
2B2U	Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and dimethylarginine 2 Descriptor: Chromodomain-helicase-DNA-binding protein 1, Histone H3 Authors: Flanagan IV, J.F, Mi, L.-Z, Chruszcz, M, Cymborowski, M, Clines, K.L, Kim, Y, Minor, W, Rastinejad, F, Khorasanizadeh, S. Deposit date: 2005-09-19 Release date: 2005-12-27 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Double chromodomains cooperate to recognize the methylated histone H3 tail. Nature, 438, 2005
2D9U	Solution structure of the Chromo domain of chromobox homolog 2 from human Descriptor: Chromobox protein homolog 2 (isoform 2) Authors: Li, H, Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-12-13 Release date: 2007-01-02 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Solution structure of the Chromo domain of chromobox homolog 2 from human To be Published
2DNV	Solution Structure of RSGI RUH-055, a Chromo Domain from Mus musculus cDNA Descriptor: Chromobox protein homolog 8 Authors: Ruhul Momen, A.Z.M, Hirota, H, Tomizawa, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-04-26 Release date: 2006-10-26 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Solution Structure of RSGI RUH-055, a Chromo Domain from Mus musculus cDNA To be published
2DNT	Solution Structure of RSGI RUH-064, a Chromo Domain from Human cDNA Descriptor: Chromodomain protein, Y chromosome-like, isoform b Authors: Ruhul Momen, A.Z.M, Hirota, H, Izumi, K, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-04-26 Release date: 2006-10-26 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Solution Structure of RSGI RUH-064, a Chromo Domain from Human cDNA to be published
2DY8	Solution structure of the second chromodomain of yeast Chd1 Descriptor: Chromo domain protein 1 Authors: Okuda, M, Nishimura, Y. Deposit date: 2006-09-07 Release date: 2006-11-28 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Structural Polymorphism of Chromodomains in Chd1 J.Mol.Biol., 365, 2007
2EE1	Solution structures of the Chromo domain of human chromodomain helicase-DNA-binding protein 4 Descriptor: Chromodomain helicase-DNA-binding protein 4 Authors: Sato, M, Tochio, N, Koshiba, S, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-02-15 Release date: 2007-08-21 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Solution structures of the Chromo domain of human chromodomain helicase-DNA-binding protein 4 To be Published
2EPB	Solution structure of chromo domain 2 in Chromodomain-helicase-DNA-binding protein 6 Descriptor: Chromodomain-helicase-DNA-binding protein 6 Authors: Tsuda, K, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-03-29 Release date: 2007-10-02 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Solution structure of chromo domain 2 in Chromodomain-helicase-DNA-binding protein 6 To be Published
6Q3M	Structure of CHD4 PHD2 - tandem chromodomains Descriptor: 1,2-ETHANEDIOL, Chromodomain-helicase-DNA-binding protein 4, DI(HYDROXYETHYL)ETHER, ... Authors: Alt, A, Mancini, E.J. Deposit date: 2018-12-04 Release date: 2019-12-25 Method: X-RAY DIFFRACTION (2.52 Å) Cite: Structure of histone readers To Be Published
6GUU	Structure of CHD5 PHD2 - tandem chromodomains Descriptor: Chromodomain-helicase-DNA-binding protein 5, ZINC ION Authors: Alt, A, Mancini, E.J. Deposit date: 2018-06-19 Release date: 2019-10-09 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Structure of CHD5 PHD2 - tandem chromodomains To Be Published
5O9G	Structure of nucleosome-Chd1 complex Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Chromo domain-containing protein 1, ... Authors: Farnung, L, Vos, S.M, Wigge, C, Cramer, P. Deposit date: 2017-06-19 Release date: 2017-10-11 Last modified: 2017-11-01 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: Nucleosome-Chd1 structure and implications for chromatin remodelling. Nature, 550, 2017
4FSX	crystal structure of Se-substituted Zea mays ZMET2 in complex with SAH Descriptor: DNA (cytosine-5)-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE Authors: Du, J, Patel, D.J. Deposit date: 2012-06-27 Release date: 2012-10-17 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants. Cell(Cambridge,Mass.), 151, 2012
4FT4	crystal structure of Zea mays ZMET2 in complex H3(1-32)K9me2 peptide and SAH Descriptor: DNA (cytosine-5)-methyltransferase 1, H3(1-32)K9me2 peptide, S-ADENOSYL-L-HOMOCYSTEINE Authors: Du, J, Patel, D.J. Deposit date: 2012-06-27 Release date: 2012-10-17 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants. Cell(Cambridge,Mass.), 151, 2012
4FT2	crystal structure of Zea mays ZMET2 in complex H3(1-15)K9me2 peptide and SAH Descriptor: DNA (cytosine-5)-methyltransferase 1, H3 peptide, S-ADENOSYL-L-HOMOCYSTEINE Authors: Du, J, Patel, D.J. Deposit date: 2012-06-27 Release date: 2012-10-17 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants. Cell(Cambridge,Mass.), 151, 2012
6RYU	Nucleosome-CHD4 complex structure (two CHD4 copies) Descriptor: Chromodomain-helicase-DNA-binding protein 4,CHD4,Chromodomain-helicase-DNA-binding protein 4, DNA (149-MER), Histone H2A type 1, ... Authors: Farnung, L, Ochmann, M, Cramer, P. Deposit date: 2019-06-12 Release date: 2020-07-15 Method: ELECTRON MICROSCOPY (4 Å) Cite: Nucleosome-CHD4 chromatin remodeller structure maps human disease mutations. Elife, 9, 2020
6RYR	Nucleosome-CHD4 complex structure (single CHD4 copy) Descriptor: Chromodomain-helicase-DNA-binding protein 4,Chromodomain-helicase-DNA-binding protein 4,Chromodomain-helicase-DNA-binding protein 4, DNA (149-MER), Histone H2A type 1, ... Authors: Farnung, L, Ochmann, M, Cramer, P. Deposit date: 2019-06-11 Release date: 2020-07-15 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Nucleosome-CHD4 chromatin remodeller structure maps human disease mutations. Elife, 9, 2020
6S47	Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 Descriptor: 18S rRNA (1707-MER), 28S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Kasari, V, Pochopien, A.A, Margus, T, Murina, V, Turnbull, K, Zhou, Y, Nissan, T, Graf, M, Novacek, J, Atkinson, G.C, Johansson, M.J.O, Wilson, D.N, Hauryliuk, V. Deposit date: 2019-06-26 Release date: 2019-07-24 Last modified: 2019-10-23 Method: ELECTRON MICROSCOPY (3.28 Å) Cite: A role for the Saccharomyces cerevisiae ABCF protein New1 in translation termination/recycling. Nucleic Acids Res., 47, 2019
6FTX	Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Chromatin-remodeling ATPase, ... Authors: Sundaramoorthy, R, Owen-hughes, T, Norman, D.G, Hughes, A. Deposit date: 2018-02-25 Release date: 2018-08-08 Last modified: 2018-10-17 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome. Elife, 7, 2018
7R78	cryo-EM structure of DNMT5 quaternary complex with hemimethylated DNA, AMP-PNP and SAH Descriptor: DNA (5'-D(*TP*GP*CP*GP*CP*TP*GP*AP*CP*A)-3'), DNA (5'-D(P*CP*AP*GP*(5CM)P*GP*CP*AP*T)-3'), DNA repair protein Rad8, ... Authors: Wang, J, Patel, D.J. Deposit date: 2021-06-24 Release date: 2022-02-23 Last modified: 2022-03-30 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structural insights into DNMT5-mediated ATP-dependent high-fidelity epigenome maintenance. Mol.Cell, 82, 2022

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