PDB: 1416 resultsInfo pagesStatus searchChemie searchBIRD

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2OJR	Structure of ubiquitin solved by SAD using the Lanthanide-Binding Tag Descriptor: TERBIUM(III) ION, Ubiquitin Authors: Silvaggi, N.R, Allen, K.N. Deposit date: 2007-01-13 Release date: 2007-06-12 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Double-Lanthanide-Binding Tags for Macromolecular Crystallographic Structure Determination. J.Am.Chem.Soc., 129, 2007
2WX0	TAB2 NZF DOMAIN IN COMPLEX WITH Lys63-linked di-ubiquitin, P21 Descriptor: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING PROTEIN 2, UBIQUITIN, ZINC ION Authors: Kulathu, Y, Akutsu, M, Bremm, A, Hofmann, K, Komander, D. Deposit date: 2009-10-30 Release date: 2009-11-24 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Two-Sided Ubiquitin Binding Explains Specificity of the Tab2 Nzf Domain Nat.Struct.Mol.Biol., 16, 2009
2O6V	Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, Ubiquitin Authors: Eddins, M.J, Wolberger, C. Deposit date: 2006-12-08 Release date: 2007-02-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure and Solution NMR Studies of Lys48-linked Tetraubiquitin at Neutral pH J.Mol.Biol., 367, 2007
2WYQ	THE CRYSTAL STRUCTURE OF THE UBIQUITIN-LIKE (UBL) DOMAIN OF HHR23A (HUMAN HOMOLOGUE A OF RAD23) Descriptor: SULFATE ION, UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A Authors: Chen, Y.W. Deposit date: 2009-11-19 Release date: 2010-11-10 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.651 Å) Cite: The Crystal Structure of the Ubiquitin-Like (Ubl) Domain of Human Homologue a of Rad23 (Hhr23A) Protein Protein Eng.Des.Sel., 24, 2011
2WX1	TAB2 NZF DOMAIN IN COMPLEX WITH Lys63-linked tri-ubiquitin, P212121 Descriptor: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING PROTEIN 2, UBIQUITIN, ZINC ION Authors: Kulathu, Y, Akutsu, M, Bremm, A, Hofmann, K, Komander, D. Deposit date: 2009-10-30 Release date: 2009-11-24 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Two-Sided Ubiquitin Binding Explains Specificity of the Tab2 Nzf Domain Nat.Struct.Mol.Biol., 16, 2009
2NR2	The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native states ensembles of proteins Descriptor: Ubiquitin Authors: Richter, B, Gsponer, J, Varnai, P, Salvatella, X, Vendruscolo, M. Deposit date: 2006-11-01 Release date: 2007-05-08 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins J.Biomol.Nmr, 37, 2007
7BU0	Crystal structure of a OTU deubiquitinase in complex with Ub-PA Descriptor: Polyubiquitin-B, Uncharacterized protein, prop-2-en-1-amine Authors: Ouyang, S.Y, Zhen, X.K. Deposit date: 2020-04-03 Release date: 2020-11-18 Last modified: 2023-04-05 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Interplay between bacterial deubiquitinase and ubiquitin E3 ligase regulates ubiquitin dynamics on Legionella phagosomes. Elife, 9, 2020
2WWZ	TAB2 NZF DOMAIN IN COMPLEX WITH Lys63-linked di-ubiquitin, P212121 Descriptor: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING PROTEIN 2, UBIQUITIN, ZINC ION Authors: Kulathu, Y, Akutsu, M, Bremm, A, Hofmann, K, Komander, D. Deposit date: 2009-10-30 Release date: 2009-11-24 Last modified: 2019-07-31 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Two-Sided Ubiquitin Binding Explains Specificity of the Tab2 Nzf Domain Nat.Struct.Mol.Biol., 16, 2009
2OOB	crystal structure of the UBA domain from Cbl-b ubiquitin ligase in complex with ubiquitin Descriptor: E3 ubiquitin-protein ligase CBL-B, Ubiquitin Authors: Kozlov, G, Gehring, K. Deposit date: 2007-01-25 Release date: 2007-02-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-b. Mol.Cell, 27, 2007
2PE9	NMR Based Structure of the Open Conformation of LYS48-Linked Di-UBiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements Descriptor: Ubiquitin Authors: Ryabov, Y, Fushman, D. Deposit date: 2007-04-02 Release date: 2007-07-10 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
2XEW	Crystal structure of K11-linked diubiquitin Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, CITRATE ANION, ... Authors: Bremm, A, Freund, S.M.V, Komander, D. Deposit date: 2010-05-18 Release date: 2010-07-14 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Lys11-Linked Ubiquitin Chains Adopt Compact Conformations and are Preferentially Hydrolyzed by the Deubiquitinase Cezanne Nat.Struct.Mol.Biol., 17, 2010
7CAP	Cyclic Lys48-linked triubiquitin Descriptor: Ubiquitin, ZINC ION Authors: Hiranyakorn, M, Yanaka, S, Satoh, T, Wilasri, T, Jityuti, B, Yagi-Utsumi, T, Kato, K. Deposit date: 2020-06-09 Release date: 2020-08-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.33 Å) Cite: NMR Characterization of Conformational Interconversions of Lys48-Linked Ubiquitin Chains. Int J Mol Sci, 21, 2020
2PEA	NMR Based Structure of the Closed Conformation of LYS48-Linked Di-Ubiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements Descriptor: Ubiquitin Authors: Ryabov, Y, Fushman, D. Deposit date: 2007-04-02 Release date: 2007-07-10 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
2XK5	Crystal structure of K6-linked diubiquitin Descriptor: UBIQUITIN, ZINC ION Authors: Virdee, S, Chin, J.W, Komander, D. Deposit date: 2010-07-07 Release date: 2010-08-25 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Engineered Diubiquitin Synthesis Reveals K29-Isopeptide Specificity of an Otu Deubiquitinase Nat.Chem.Biol., 6, 2010
2ZCC	Ubiquitin crystallized under high pressure Descriptor: Ubiquitin, ZINC ION Authors: Kitahara, R, Tanaka, T, Yamashita, M, Araya, K, Yokoyama, S, Akasaka, K, Taniguchi, Y, Kato, M. Deposit date: 2007-11-08 Release date: 2007-11-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structure of Ubiquitin crystallized under high pressure to be published
2ZEQ	Crystal structure of ubiquitin-like domain of murine Parkin Descriptor: E3 ubiquitin-protein ligase parkin Authors: Tomoo, K. Deposit date: 2007-12-14 Release date: 2008-08-19 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal structure and molecular dynamics simulation of ubiquitin-like domain of murine parkin Biochim.Biophys.Acta, 1784, 2008
7EAL	The structure of the A20-Binding Inhibitor of NF-kB 1 in complex with di-ubiquitin Descriptor: GLYCEROL, TNFAIP3-interacting protein 1, ubiquitin Authors: Lo, Y.C, Lin, S.C. Deposit date: 2021-03-07 Release date: 2021-07-21 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural and Biochemical Basis for Higher-Order Assembly between A20-Binding Inhibitor of NF-kappa B 1 (ABIN1) and M1-Linked Ubiquitins. J.Mol.Biol., 433, 2021
7EAO	The structure of the A20-binding inhibitor of NF-kB 1 in complex with tri-ubiquitin Descriptor: Polyubiquitin-C, TNFAIP3-interacting protein 1 Authors: Lo, Y.C, Lin, S.C. Deposit date: 2021-03-07 Release date: 2021-07-21 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural and Biochemical Basis for Higher-Order Assembly between A20-Binding Inhibitor of NF-kappa B 1 (ABIN1) and M1-Linked Ubiquitins. J.Mol.Biol., 433, 2021
7EB9	The structure of the A20-binding inhibitor of NF-kB 1 in complex with tetra-ubiquitin Descriptor: TNFAIP3-interacting protein 1, tetra ubiquitin Authors: Lo, Y.C, Lin, S.C. Deposit date: 2021-03-09 Release date: 2021-07-21 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural and Biochemical Basis for Higher-Order Assembly between A20-Binding Inhibitor of NF-kappa B 1 (ABIN1) and M1-Linked Ubiquitins. J.Mol.Biol., 433, 2021
7E62	Mouse TAB2 NZF in complex with Lys6-linked diubiquitin Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, TGF-beta-activated kinase 1 and MAP3K7-binding protein 2, Ubiquitin, ... Authors: Sato, Y, Li, Y, Okatsu, K, Fukai, S. Deposit date: 2021-02-21 Release date: 2021-08-18 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Structural basis for specific recognition of K6-linked polyubiquitin chains by the TAB2 NZF domain. Biophys.J., 120, 2021
2ZCB	Crystal Structure of ubiquitin P37A/P38A Descriptor: Ubiquitin, ZINC ION Authors: Kitahara, R, Tanaka, T, Sakata, E, Yamaguchi, Y, Kato, K, Yokoyama, S. Deposit date: 2007-11-08 Release date: 2007-11-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal Structure of ubiquitin P37A/P38A To be published
3A9J	Crystal structure of the mouse TAB2-NZF in complex with Lys63-linked di-ubiquitin Descriptor: Mitogen-activated protein kinase kinase kinase 7-interacting protein 2, Ubiquitin, ZINC ION Authors: Sato, Y, Yoshikawa, A, Yamashita, M, Yamagata, A, Fukai, S. Deposit date: 2009-10-29 Release date: 2009-12-08 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3 Embo J., 28, 2009
2RSU	Alternative structure of Ubiquitin Descriptor: Ubiquitin Authors: Kitazawa, S, Kameda, T, Yagi-Utsumi, M, Kato, K, Kitahara, R. Deposit date: 2012-06-15 Release date: 2013-03-27 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Solution Structure of the Q41N Variant of Ubiquitin as a Model for the Alternatively Folded N2 State of Ubiquitin Biochemistry, 52, 2013
3A9K	Crystal structure of the mouse TAB3-NZF in complex with Lys63-linked di-ubiquitin Descriptor: Mitogen-activated protein kinase kinase kinase 7-interacting protein 3, Ubiquitin, ZINC ION Authors: Sato, Y, Yoshikawa, A, Yamashita, M, Yamagata, A, Fukai, S. Deposit date: 2009-10-29 Release date: 2009-12-08 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3 Embo J., 28, 2009
2RU6	The pure alternative state of ubiquitin Descriptor: Ubiquitin Authors: Kitazawa, S, Kameda, T, Kumo, A, Utsumi, M, Baxter, N, Kato, K, Williamson, M.P, Kitahara, R. Deposit date: 2013-12-04 Release date: 2014-02-12 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Close Identity between Alternatively Folded State N2 of Ubiquitin and the Conformation of the Protein Bound to the Ubiquitin-Activating Enzyme Biochemistry, 53, 2014

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