2QQR
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JMJD2A HYBRID TUDOR DOMAINS
Descriptor:JmjC domain-containing histone demethylation protein 3A, SULFATE ION
Authors:Lee, J., Botuyan, M.V., Mer, G.
Deposit date:2007-07-26
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Distinct binding modes specify the recognition of methylated histones H3K4 and H4K20 by JMJD2A-tudor.
Nat.Struct.Mol.Biol., 15, 2008
2QQS
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JMJD2A TANDEM TUDOR DOMAINS IN COMPLEX WITH A TRIMETHYLATED HISTONE H4-K20 PEPTIDE
Descriptor:JmjC domain-containing histone demethylation protein 3A, METHYLATED HISTONE H4 PEPTIDE
Authors:Lee, J., Botuyan, M.V., Mer, G.
Deposit date:2007-07-26
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Distinct binding modes specify the recognition of methylated histones H3K4 and H4K20 by JMJD2A-tudor.
Nat.Struct.Mol.Biol., 15, 2008
2RI7
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CRYSTAL STRUCTURE OF PHD FINGER-LINKER-BROMODOMAIN Y17E MUTANT FROM HUMAN BPTF IN THE H3(1-9)K4ME2 BOUND STATE
Descriptor:Nucleosome-remodeling factor subunit BPTF, histone H3.1, ZINC ION, ...
Authors:Li, H., Patel, D.J.
Deposit date:2007-10-10
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural Basis for Lower Lysine Methylation State-Specific Readout by MBT Repeats of L3MBTL1 and an Engineered PHD Finger.
Mol.Cell, 28, 2007
2VD7
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CRYSTAL STRUCTURE OF JMJD2A COMPLEXED WITH INHIBITOR PYRIDINE-2,4- DICARBOXYLIC ACID
Descriptor:JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3A, NICKEL (II) ION, ZINC ION, ...
Authors:Ng, S.S., von Delft, F., Pilka, E.S., Kavanagh, K.L., McDonough, M.A., Savitsky, P., Arrowsmith, C.H., Weigelt, J., Edwards, A., Sundstrom, M., Schofield, C.J., Oppermann, U.
Deposit date:2007-10-01
Release date:2007-11-27
Last modified:2018-03-28
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Inhibitor scaffolds for 2-oxoglutarate-dependent histone lysine demethylases.
J. Med. Chem., 51, 2008
3K26
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COMPLEX STRUCTURE OF EED AND TRIMETHYLATED H3K4
Descriptor:Polycomb protein EED, HISTONE PEPTIDE
Authors:Bian, C.B., Xu, C., Qiu, W., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)
Deposit date:2009-09-29
Release date:2009-12-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Binding of different histone marks differentially regulates the activity and specificity of polycomb repressive complex 2 (PRC2).
Proc.Natl.Acad.Sci.USA, 107, 2010
3MEV
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CRYSTAL STRUCTURE OF SGF29 IN COMPLEX WITH R2AK4ME3
Descriptor:SAGA-associated factor 29 homolog, Histone H3, SULFATE ION, ...
Authors:Bian, C.B., Xu, C., Lam, R., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A.M., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)
Deposit date:2010-03-31
Release date:2010-04-28
Last modified:2012-05-09
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation.
Embo J., 30, 2011
3MP6
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COMPLEX STRUCTURE OF SGF29 AND DIMETHYLATED H3K4
Descriptor:Maltose-binding periplasmic protein,LINKER,SAGA-associated factor 29, H3K4me2 peptide, MALTOSE
Authors:Li, J., Wu, M., Ruan, J., Zang, J.
Deposit date:2010-04-25
Release date:2011-05-04
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation
Embo J., 30, 2011
3MP8
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CRYSTAL STRUCTURE OF SGF29 TUDOR DOMAIN
Descriptor:Maltose-binding periplasmic protein,LINKER,SAGA-associated factor 29, MALTOSE, GLYCEROL, ...
Authors:Li, J., Wu, M., Ruan, J., Zang, J.
Deposit date:2010-04-26
Release date:2011-05-04
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation
Embo J., 30, 2011
3MWY
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CRYSTAL STRUCTURE OF THE CHROMODOMAIN-ATPASE PORTION OF THE YEAST CHD1 CHROMATIN REMODELER
Descriptor:Chromo domain-containing protein 1, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Hauk, G., Bowman, G.D.
Deposit date:2010-05-06
Release date:2010-09-29
Last modified:2013-01-30
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:The chromodomains of the Chd1 chromatin remodeler regulate DNA access to the ATPase motor.
Mol.Cell, 39, 2010
3NJY
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CRYSTAL STRUCTURE OF JMJD2A COMPLEXED WITH 5-CARBOXY-8-HYDROXYQUINOLINE
Descriptor:Lysine-specific demethylase 4A, NICKEL (II) ION, ZINC ION, ...
Authors:King, O.N.F., Clifton, I.J., Wang, M., Maloney, D.J., Jadhav, A., Oppermann, U., Heightman, T.D., Simeonov, A., McDonough, M.A., Schofield, C.J.
Deposit date:2010-06-18
Release date:2010-12-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Quantitative high-throughput screening identifies 8-hydroxyquinolines as cell-active histone demethylase inhibitors
Plos One, 5, 2010
3PDQ
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CRYSTAL STRUCTURE OF JMJD2A COMPLEXED WITH BIPYRIDYL INHIBITOR
Descriptor:Lysine-specific demethylase 4A, NICKEL (II) ION, ZINC ION, ...
Authors:King, O.N.F., Chang, K.-H., Rose, N.R., Clifton, I.J., McDonough, M.A., Schofield, C.J.
Deposit date:2010-10-23
Release date:2011-03-30
Last modified:2014-03-26
Method:X-RAY DIFFRACTION (1.989 Å)
Cite:Inhibition of histone demethylases by 4-carboxy-2,2'-bipyridyl compounds
Chemmedchem, 6, 2011
3QZS
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CRYSTAL STRUCTURE OF BPTF BROMO IN COMPLEX WITH HISTONE H4K16AC - FORM I
Descriptor:Nucleosome-remodeling factor subunit BPTF, Histone H4
Authors:Li, H., Ruthenburg, A.J., Patel, D.J.
Deposit date:2011-03-07
Release date:2011-06-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Recognition of a Mononucleosomal Histone Modification Pattern by BPTF via Multivalent Interactions.
Cell(Cambridge,Mass.), 145, 2011
3QZT
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CRYSTAL STRUCTURE OF BPTF BROMO IN COMPLEX WITH HISTONE H4K16AC - FORM II
Descriptor:Nucleosome-remodeling factor subunit BPTF, Histone H4, GLYCEROL
Authors:Li, H., Ruthenburg, A.J., Patel, D.J.
Deposit date:2011-03-07
Release date:2011-06-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Recognition of a Mononucleosomal Histone Modification Pattern by BPTF via Multivalent Interactions.
Cell(Cambridge,Mass.), 145, 2011
3QZV
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CRYSTAL STRUCTURE OF BPTF PHD-LINKER-BROMO IN COMPLEX WITH HISTONE H4K12AC PEPTIDE
Descriptor:Nucleosome-remodeling factor subunit BPTF, Histone H4, ZINC ION
Authors:Li, H., Ruthenburg, A.J., Patel, D.J.
Deposit date:2011-03-07
Release date:2011-06-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Recognition of a Mononucleosomal Histone Modification Pattern by BPTF via Multivalent Interactions.
Cell(Cambridge,Mass.), 145, 2011
3RVH
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CRYSTAL STRUCTURE OF JMJD2A COMPLEXED WITH INHIBITOR
Descriptor:Lysine-specific demethylase 4A, NICKEL (II) ION, ZINC ION, ...
Authors:King, O.N.F., Maloney, D.J., Tumber, A., Rai, G., Jadhav, A., Clifton, I.J., Heightman, T.D., Simeonov, A., McDonough, M.A., Schofield, C.J.
Deposit date:2011-05-06
Release date:2012-05-09
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.251 Å)
Cite:Crystal Structure of JMJD2A Complexed with Inhibitor
To be Published
3U4S
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HISTONE LYSINE DEMETHYLASE JMJD2A IN COMPLEX WITH T11C PEPTIDE SUBSTRATE CROSSLINKED TO N-OXALYL-D-CYSTEINE
Descriptor:Lysine-specific demethylase 4A, HISTONE 3 TAIL ANALOG (T11C Peptide), NICKEL (II) ION, ...
Authors:Ma, J., McDonough, M.A., Schofield, C.J.
Deposit date:2011-10-10
Release date:2012-02-08
Last modified:2012-02-22
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Linking of 2-Oxoglutarate and Substrate Binding Sites Enables Potent and Highly Selective Inhibition of JmjC Histone Demethylases.
Angew.Chem.Int.Ed.Engl., 51, 2012
3UV2
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CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF
Descriptor:bromodomain of human nucleosome-remodeling factor subunit BPTF, 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL
Authors:Filippakopoulos, P., Picaud, S., Keates, T., Ugochukwu, E., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)
Deposit date:2011-11-29
Release date:2012-01-18
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Histone recognition and large-scale structural analysis of the human bromodomain family.
Cell(Cambridge,Mass.), 149, 2012
4BIS
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JMJD2A COMPLEXED WITH 8-HYDROXYQUINOLINE-4-CARBOXYLIC ACID
Descriptor:LYSINE-SPECIFIC DEMETHYLASE 4A, NICKEL (II) ION, ZINC ION, ...
Authors:Chowdhury, R., Thinnes, C., Schofield, C.J.
Deposit date:2013-04-12
Release date:2014-02-05
Last modified:2018-03-28
Method:X-RAY DIFFRACTION (2.493 Å)
Cite:5-Carboxy-8-hydroxyquinoline is a Broad Spectrum 2-Oxoglutarate Oxygenase Inhibitor which Causes Iron Translocation.
Chem Sci, 4, 2013
4C1Q
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CRYSTAL STRUCTURE OF THE PRDM9 SET DOMAIN IN COMPLEX WITH H3K4ME2 AND ADOHCY.
Descriptor:HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9, HISTONE H3.1, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Mathioudakis, N., Cusack, S., Kadlec, J.
Deposit date:2013-08-13
Release date:2013-10-16
Last modified:2013-11-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular Basis for the Regulation of the H3K4 Methyltransferase Activity of Prdm9.
Cell Rep., 5, 2013
4GD4
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CRYSTAL STRUCTURE OF JMJD2A COMPLEXED WITH INHIBITOR
Descriptor:Lysine-specific demethylase 4A, NICKEL (II) ION, ZINC ION, ...
Authors:King, O.N.F., Krojer, T., Arrowsmith, C.H., Edwards, A., Bountra, C., McDonough, M.A., Schofield, C.J., Structural Genomics Consortium (SGC)
Deposit date:2012-07-31
Release date:2012-08-15
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Crystal Structure of JMJD2A Complexed with Inhibitor
TO BE PUBLISHED
4H75
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CRYSTAL STRUCTURE OF HUMAN SPINDLIN1 IN COMPLEX WITH A HISTONE H3K4(ME3) PEPTIDE
Descriptor:Spindlin-1, Histone H3, GLYCEROL, ...
Authors:Yang, N., Wang, W., Wang, Y., Wang, M., Zhao, Q., Rao, Z., Zhu, B., Xu, R.M.
Deposit date:2012-09-20
Release date:2012-10-03
Last modified:2012-11-14
Method:X-RAY DIFFRACTION (2.098 Å)
Cite:Distinct mode of methylated lysine-4 of histone H3 recognition by tandem tudor-like domains of Spindlin1.
Proc.Natl.Acad.Sci.USA, 109, 2012
4URA
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CRYSTAL STRUCTURE OF HUMAN JMJD2A IN COMPLEX WITH COMPOUND 14A
Descriptor:LYSINE-SPECIFIC DEMETHYLASE 4A, 1,2-ETHANEDIOL, SULFATE ION, ...
Authors:Krojer, T., England, K.S., Vollmar, M., Crawley, L., Williams, E., Riesebos, E., Szykowska, A., Burgess-Brown, N., Oppermann, U., Brennan, P.E., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.
Deposit date:2014-06-27
Release date:2015-06-17
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Optimisation of a triazolopyridine based histone demethylase inhibitor yields a potent and selective KDM2A (FBXL11) inhibitor.
Medchemcomm, 5, 2014
5A1H
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CRYSTAL STRUCTURE OF HUMAN SPINDLIN3
Descriptor:SPINDLIN-3
Authors:Srikannathasan, V., Gileadi, C., Johansson, C., Shrestha, L., Tallon, R., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A., Oppermann, U.
Deposit date:2015-04-30
Release date:2015-06-17
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Human Spindlin3
To be Published
5A7N
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CRYSTAL STRUCTURE OF HUMAN JMJD2A IN COMPLEX WITH COMPOUND 43
Descriptor:LYSINE-SPECIFIC DEMETHYLASE 4A, MANGANESE (II) ION, ZINC ION, ...
Authors:Nowak, R., Velupillai, S., Krojer, T., Gileadi, C., Johansson, C., Korczynska, M., Le, D.D., Younger, N., Gregori-Puigjane, E., Tumber, A., Iwasa, E., Pollock, S.B., Ortiz Torres, I., Williams, E., Riesebos, E., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A., Shoichet, B.K., Fujimori, D.G., Oppermann, U.
Deposit date:2015-07-09
Release date:2016-01-13
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Docking and Linking of Fragments to Discover Jumonji Histone Demethylase Inhibitors.
J.Med.Chem., 59, 2016
5A7O
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CRYSTAL STRUCTURE OF HUMAN JMJD2A IN COMPLEX WITH COMPOUND 42
Descriptor:LYSINE-SPECIFIC DEMETHYLASE 4A, SULFATE ION, 2-[5-(2-methoxyethanoylamino)-2-oxidanyl-phenyl]pyridine-4-carboxylic acid, ...
Authors:Nowak, R., Velupillai, S., Krojer, T., Gileadi, C., Johansson, C., Korczynska, M., Le, D.D., Younger, N., Gregori-Puigjane, E., Tumber, A., Iwasa, E., Pollock, S.B., Ortiz Torres, I., Pinkas, D.M., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A., Shoichet, B.K., Fujimori, D.G., Oppermann, U.
Deposit date:2015-07-09
Release date:2016-01-13
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Docking and Linking of Fragments to Discover Jumonji Histone Demethylase Inhibitors.
J.Med.Chem., 59, 2016
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