PDB: 30389 resultsInfo pagesStatus searchChemie searchBIRD

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6WPI	Crystal structure of Nop9 in complex with ITS1 RNA Descriptor: 3,3',3''-phosphanetriyltripropanoic acid, GLYCEROL, Nucleolar protein 9, ... Authors: Zhang, J, Qiu, C, Hall, T.M.T. Deposit date: 2020-04-27 Release date: 2020-05-20 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.02 Å) Cite: Nop9 recognizes structured and single-stranded RNA elements of preribosomal RNA. Rna, 26, 2020
7PMQ	DEAD-box helicase DbpA in the active conformation bound to a hairpin loop RNA and ADP/BeF3 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DbpA, BERYLLIUM TRIFLUORIDE ION, ... Authors: Wurm, J.P. Deposit date: 2021-09-02 Release date: 2022-09-14 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3.22 Å) Cite: Structural basis for RNA-duplex unwinding by the DEAD-box helicase DbpA. Rna, 29, 2023
7PLI	DEAD-box helicase DbpA bound to single stranded RNA and ADP/BeF3 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DbpA, BERYLLIUM TRIFLUORIDE ION, ... Authors: Wurm, J.P. Deposit date: 2021-08-31 Release date: 2022-09-07 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural basis for RNA-duplex unwinding by the DEAD-box helicase DbpA. Rna, 29, 2023
6FQR	Crystal structure of IMP3 RRM12 in complex with RNA (CCCC) Descriptor: Insulin-like growth factor 2 mRNA-binding protein 3, RNA CCCC Authors: Jia, M, Gut, H, Chao, A.J. Deposit date: 2018-02-14 Release date: 2018-09-05 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural basis of IMP3 RRM12 recognition of RNA. RNA, 24, 2018
6GX6	Crystal structure of IMP3 RRM12 in complex with RNA (ACAC) Descriptor: 1,2-ETHANEDIOL, Insulin-like growth factor 2 mRNA-binding protein 3, PHOSPHATE ION, ... Authors: Jia, M, Gut, H, Chao, A.J. Deposit date: 2018-06-26 Release date: 2018-09-05 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis of IMP3 RRM12 recognition of RNA. RNA, 24, 2018
4JNG	Schmallenberg virus nucleoprotein-RNA complex Descriptor: Nucleocapsid protein, RNA (42-MER) Authors: Dong, H.H, Li, P, Bottcher, B, Elliott, R.M, Dong, C.J. Deposit date: 2013-03-15 Release date: 2013-07-31 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.12 Å) Cite: Crystal structure of Schmallenberg orthobunyavirus nucleoprotein-RNA complex reveals a novel RNA sequestration mechanism. Rna, 19, 2013
4XQ0	Structure of fission yeast RNA polymerase II CTD phosphatase Fcp1-R271A bound to beryllium fluoride Descriptor: MAGNESIUM ION, RNA polymerase II subunit A C-terminal domain phosphatase, TETRAETHYLENE GLYCOL Authors: Ghosh, A, Lima, C.D. Deposit date: 2015-01-18 Release date: 2015-03-04 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Genetic and structural analysis of the essential fission yeast RNA polymerase II CTD phosphatase Fcp1. Rna, 21, 2015
4XPZ	Structure of fission yeast RNA polymerase II CTD phosphatase Fcp1-R271A bound to aluminum fluoride Descriptor: ALUMINUM FLUORIDE, MAGNESIUM ION, RNA polymerase II subunit A C-terminal domain phosphatase, ... Authors: Ghosh, A, Lima, C.D. Deposit date: 2015-01-18 Release date: 2015-03-04 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Genetic and structural analysis of the essential fission yeast RNA polymerase II CTD phosphatase Fcp1. Rna, 21, 2015
7XPL	Crystal structure of a C/D-free RNA-guided RNA 2'-O-methyltransferase Descriptor: BMG3 RNA strand A, BMG3 RNA strand B, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit, ... Authors: Wang, J, Ye, K. Deposit date: 2022-05-04 Release date: 2022-10-05 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.213 Å) Cite: Methylation guide RNAs without box C/D motifs. Rna, 28, 2022
1MHK	Crystal Structure Analysis of a 26mer RNA molecule, representing a new RNA motif, the hook-turn Descriptor: BROMIDE ION, RNA 12-mer BCh12, RNA 14-mer BCh12 Authors: Szep, S, Wang, J, Moore, P.B. Deposit date: 2002-08-20 Release date: 2002-09-06 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The crystal structure of a 26-nucleotide RNA containing a hook-turn RNA, 9, 2003
3I32	Dimeric structure of a Hera helicase fragment including the C-terminal RecA domain, the dimerization domain, and the RNA binding domain Descriptor: BROMIDE ION, Heat resistant RNA dependent ATPase Authors: Rudolph, M.G, Klostermeier, D. Deposit date: 2009-06-30 Release date: 2009-09-22 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: The Thermus thermophilus DEAD box helicase Hera contains a modified RNA recognition motif domain loosely connected to the helicase core. Rna, 15, 2009
3I31	Hera helicase RNA binding domain is an RRM fold Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Heat resistant RNA dependent ATPase, SODIUM ION, ... Authors: Rudolph, M.G, Klostermeier, D. Deposit date: 2009-06-30 Release date: 2009-09-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.8 Å) Cite: The Thermus thermophilus DEAD box helicase Hera contains a modified RNA recognition motif domain loosely connected to the helicase core. Rna, 15, 2009
2R1S	Structure of the RNA brominated tridecamer r(GCGUU-5BUGAAACGC) at 1.4 A (Br1) Descriptor: MAGNESIUM ION, RNA (5'-R(*GP*CP*GP*UP*UP*(5BU)P*GP*AP*AP*AP*CP*GP*C)-3'), SODIUM ION Authors: Timsit, Y, Bombard, S. Deposit date: 2007-08-23 Release date: 2007-09-25 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.4 Å) Cite: The 1.3 A resolution structure of the RNA tridecamer r(GCGUUUGAAACGC): Metal ion binding correlates with base unstacking and groove contraction. Rna, 13, 2007
2R20	Structure of the RNA brominated tridecamer r(GCGUU-5BUGAAACGC) at 1.3 A (Br2) Descriptor: MAGNESIUM ION, RNA (5'-R(*GP*CP*GP*UP*UP*(5BU)P*GP*AP*AP*AP*CP*GP*C)-3'), SODIUM ION Authors: Timsit, Y, Bombard, S. Deposit date: 2007-08-24 Release date: 2007-09-25 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.3 Å) Cite: The 1.3 A resolution structure of the RNA tridecamer r(GCGUUUGAAACGC): Metal ion binding correlates with base unstacking and groove contraction. Rna, 13, 2007
3DHS	Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA Descriptor: OSMIUM ION, RNase P RNA Authors: Pace, N.R, Kazantsev, A.V, Krivenko, A.A. Deposit date: 2008-06-18 Release date: 2009-01-27 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA Rna, 15, 2009
1SY4	Refined solution structure of the S. cerevisiae U6 INTRAMOLECULAR STEM LOOP (ISL) RNA USING RESIDUAL DIPOLAR COUPLINGS (RDCS) Descriptor: U6 Intramolecular Stem-Loop RNA Authors: Reiter, N.J, Nikstad, L.J, Allman, A.M, Johnson, R.J, Butcher, S.E. Deposit date: 2004-03-31 Release date: 2004-04-06 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: Structure of the U6 RNA intramolecular stem-loop harboring an S(P)-phosphorothioate modification. RNA, 9, 2003
3DD2	Crystal structure of an RNA aptamer bound to human thrombin Descriptor: ACETIC ACID, D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, DI(HYDROXYETHYL)ETHER, ... Authors: Long, S.B, Sullenger, B.A. Deposit date: 2008-06-04 Release date: 2008-11-11 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of an RNA aptamer bound to thrombin. Rna, 14, 2008
2G0C	Structure of the RNA binding domain (residues 404-479) of the Bacillus subtilis YxiN protein Descriptor: ATP-dependent RNA helicase dbpA, SULFATE ION Authors: McKay, D.B. Deposit date: 2006-02-11 Release date: 2006-04-18 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.7 Å) Cite: The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold. RNA, 12, 2006
6S10	NMR solution structure of a ProQ homolog from Legionella pneumophila Descriptor: RNA chaperone ProQ Authors: Immer, C, Hacker, C, Woehnert, J. Deposit date: 2019-06-18 Release date: 2020-07-08 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Solution structure and RNA-binding of a minimal ProQ-homolog from Legionella pneumophila (Lpp1663). Rna, 26, 2020
1E4P	Structure of the ribozyme substrate hairpin of Neurospora VS RNA. A close look at the cleavage site Descriptor: RNA (5'-R(*GP*UP*GP*CP*GP*AP*AP*GP*AP*CP*GP*AP*AP* AP*GP*UP*CP*CP*GP*AP*GP*CP*GP*C)-3') Authors: Michiels, P.J.A, Schouten, C.H.J, Heus, H.A, Hilbers, C.W. Deposit date: 2000-07-12 Release date: 2001-01-16 Last modified: 2011-07-13 Method: SOLUTION NMR Cite: Structure of the Ribozyme Substrate Hairpin of Neurospora Vs RNA: A Close Look at the Cleavage Site RNA, 6, 2000
485D	A SULFATE POCKET FORMED BY THREE GOU PAIRS IN THE STRUCTURE OF A NONAMERIC RNA Descriptor: RNA/DNA(5'-R(*CP*GP*UP*GP*AP*UP*CP*GP)-D(*C)-3'), SULFATE ION Authors: Masquida, B, Sauter, C, Westhof, E. Deposit date: 1999-08-13 Release date: 1999-12-18 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (0.97 Å) Cite: A sulfate pocket formed by three GoU pairs in the 0.97 A resolution X-ray structure of a nonameric RNA. RNA, 5, 1999
8DCF	RNA ligase RtcB from Pyrococcus horikoshii in complex with Cu2+ and GTP Descriptor: CHLORIDE ION, COPPER (II) ION, GLYCEROL, ... Authors: Jacewicz, A, Dantuluri, S, Shuman, S. Deposit date: 2022-06-16 Release date: 2022-10-12 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.42 Å) Cite: Structures of RNA ligase RtcB in complexes with divalent cations and GTP. Rna, 28, 2022
8DCB	RNA ligase RtcB from Pyrococcus horikoshii in complex with Ni2+ and GTP Descriptor: CHLORIDE ION, GLYCEROL, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Jacewicz, A, Dantuluri, S, Shuman, S. Deposit date: 2022-06-16 Release date: 2022-10-12 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structures of RNA ligase RtcB in complexes with divalent cations and GTP. Rna, 28, 2022
8DCD	RNA ligase RtcB from Pyrococcus horikoshii in complex with Zn2+ and GTP Descriptor: CHLORIDE ION, GLYCEROL, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Jacewicz, A, Dantuluri, S, Shuman, S. Deposit date: 2022-06-16 Release date: 2022-10-12 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.22 Å) Cite: Structures of RNA ligase RtcB in complexes with divalent cations and GTP. Rna, 28, 2022
8DCA	RNA ligase RtcB from Pyrococcus horikoshii in complex with Co2+ and GTP Descriptor: COBALT (II) ION, GLYCEROL, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Jacewicz, A, Dantuluri, S, Shuman, S. Deposit date: 2022-06-16 Release date: 2022-10-12 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Structures of RNA ligase RtcB in complexes with divalent cations and GTP. Rna, 28, 2022

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