Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6Y12
DownloadVisualize
BU of 6y12 by Molmil
Arginine hydroxylase VioC in complex with (3S)-OH-Arg, succinate and Fe after oxygen exposure using FT-SSX methods
Descriptor: (2S,3S)-3-HYDROXYARGININE, Alpha-ketoglutarate-dependent L-arginine hydroxylase, FE (III) ION, ...
Authors:Rabe, P, Beale, J.H, Lang, P.A, Dirr, A.S, Leissing, T.M, Butryn, A, Aller, P, Kamps, J.J.A.G, Axford, D, McDonough, M.A, Orville, A.M, Owen, R, Schofield, C.J.
Deposit date:2020-02-11
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Anaerobic fixed-target serial crystallography.
Iucrj, 7, 2020
7TCL
DownloadVisualize
BU of 7tcl by Molmil
Crystal structure of P.IsnB complexed with tyrosine isonitrile
Descriptor: (2S)-3-(4-hydroxyphenyl)-2-isocyanopropanoic acid, MANGANESE (II) ION, SULFATE ION, ...
Authors:Kim, W, Zhang, Y.
Deposit date:2021-12-26
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Elucidation of divergent desaturation pathways in the formation of vinyl isonitrile and isocyanoacrylate.
Nat Commun, 13, 2022
3SWT
DownloadVisualize
BU of 3swt by Molmil
Crystal Structure of the Taurine catabolism dioxygenase, TauD from Mycobacterium marinum
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, FE (III) ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2011-07-14
Release date:2011-08-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Increasing the structural coverage of tuberculosis drug targets.
Tuberculosis (Edinb), 95, 2015
7QTF
DownloadVisualize
BU of 7qtf by Molmil
Crystal Structure of the Fe(II)/alpha-ketoglutarate dependent dioxygenase PlaO1 in complex with sodium succinate
Descriptor: ACETATE ION, MALONATE ION, PlaO1, ...
Authors:Lukat, P, Daum, M, Bechthold, A, Einsle, O.
Deposit date:2022-01-14
Release date:2023-01-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural investigations on the Fe(II)/alpha-ketoglutarate dependent dioxygense PlaO1 from Streptomyces sp. Tu6071
Thesis, 2011
7QTD
DownloadVisualize
BU of 7qtd by Molmil
Crystal Structure of the Fe(II)/alpha-ketoglutarate dependent dioxygenase PlaO1 in complex with iron and alpha-ketoglutarate
Descriptor: 2-OXOGLUTARIC ACID, ACETATE ION, FE (II) ION, ...
Authors:Lukat, P, Daum, M, Bechthold, A, Einsle, O.
Deposit date:2022-01-14
Release date:2023-01-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural investigations on the Fe(II)/alpha-ketoglutarate dependent dioxygense PlaO1 from Streptomyces sp. Tu6071
Thesis, 2011
7QTG
DownloadVisualize
BU of 7qtg by Molmil
Crystal Structure of the Fe(II)/alpha-ketoglutarate dependent dioxygenase PlaO1
Descriptor: FE (II) ION, PlaO1, SULFATE ION
Authors:Lukat, P, Daum, M, Bechthold, A, Einsle, O.
Deposit date:2022-01-14
Release date:2023-01-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.695 Å)
Cite:Structural investigations on the Fe(II)/alpha-ketoglutarate dependent dioxygense PlaO1 from Streptomyces sp. Tu6071
Thesis, 2011
7QTE
DownloadVisualize
BU of 7qte by Molmil
Crystal Structure of the Fe(II)/alpha-ketoglutarate dependent dioxygenase PlaO1 in complex with cobalt and succinate
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, COBALT (II) ION, PlaO1, ...
Authors:Lukat, P, Daum, M, Bechthold, A, Einsle, O.
Deposit date:2022-01-14
Release date:2023-01-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural investigations on the Fe(II)/alpha-ketoglutarate dependent dioxygense PlaO1 from Streptomyces sp. Tu6071
Thesis, 2011
2OG6
DownloadVisualize
BU of 2og6 by Molmil
Crystal structure of asparagine oxygenase in complex with Fe(II)
Descriptor: CHLORIDE ION, FE (II) ION, asparagine oxygenase
Authors:Essen, L.-O, Strieker, M.
Deposit date:2007-01-05
Release date:2007-03-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.916 Å)
Cite:Mechanistic and structural basis of stereospecific Cbeta-hydroxylation in calcium-dependent antibiotic, a daptomycin-type lipopeptide
Acs Chem.Biol., 2, 2007
6VWR
DownloadVisualize
BU of 6vwr by Molmil
X-ray structure of clavaminate synthase with vanadyl, succinate, and deoxyguanidinoproclavaminic acid
Descriptor: Clavaminate synthase 3, DEOXYGUANIDINOPROCLAVAMINIC ACID, SUCCINIC ACID, ...
Authors:Boal, A.K, Vavra, J.
Deposit date:2020-02-20
Release date:2021-02-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:X-ray structure of clavaminate synthase with vanadyl, succinate, and deoxyguanidinoproclavaminic acid
To Be Published
6VWQ
DownloadVisualize
BU of 6vwq by Molmil
X-ray crystal structure of clavaminate synthase with vanadyl, succinate, and deoxyproclavaminic acid
Descriptor: Clavaminate synthase 3, SUCCINIC ACID, deoxyproclavaminic acid, ...
Authors:Boal, A.K, Vavra, J.
Deposit date:2020-02-20
Release date:2021-02-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:X-ray crystal structure of clavaminate synthase with vanadyl, succinate, and deoxyproclavaminic acid
To Be Published
2OG5
DownloadVisualize
BU of 2og5 by Molmil
Crystal structure of asparagine oxygenase (AsnO)
Descriptor: ACETIC ACID, Putative oxygenase, SODIUM ION
Authors:Essen, L.O, Strieker, M.
Deposit date:2007-01-05
Release date:2007-03-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Mechanistic and structural basis of stereospecific Cbeta-hydroxylation in calcium-dependent antibiotic, a daptomycin-type lipopeptide.
Acs Chem.Biol., 2, 2007
2OG7
DownloadVisualize
BU of 2og7 by Molmil
Cystal structure of asparagine oxygenase in complex with Fe(II), 2S,3S-3-hydroxyasparagine and succinate
Descriptor: BETA-HYDROXYASPARAGINE, FE (II) ION, SUCCINIC ACID, ...
Authors:Essen, L.-O, Strieker, M.
Deposit date:2007-01-05
Release date:2007-03-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Mechanistic and structural basis of stereospecific Cbeta-hydroxylation in calcium-dependent antibiotic, a daptomycin-type lipopeptide
Acs Chem.Biol., 2, 2007
6XN6
DownloadVisualize
BU of 6xn6 by Molmil
ScoE with the CABA substrate bound and His299 and Arg157 flipped out
Descriptor: (3~{R})-3-(2-hydroxy-2-oxoethylamino)butanoic acid, ACETATE ION, CHLORIDE ION, ...
Authors:Jonnalagadda, R, Drennan, C.L.
Deposit date:2020-07-02
Release date:2021-01-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Biochemical and crystallographic investigations into isonitrile formation by a nonheme iron-dependent oxidase/decarboxylase.
J.Biol.Chem., 296, 2021
6XPA
DownloadVisualize
BU of 6xpa by Molmil
ScoE with oxovanadium and the CABA substrate bound and His299 and Arg157 flipped out
Descriptor: (3~{R})-3-(2-hydroxy-2-oxoethylamino)butanoic acid, ACETATE ION, CHLORIDE ION, ...
Authors:Jonnalagadda, R, Drennan, C.L.
Deposit date:2020-07-08
Release date:2021-01-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Biochemical and crystallographic investigations into isonitrile formation by a nonheme iron-dependent oxidase/decarboxylase.
J.Biol.Chem., 296, 2021
7VGN
DownloadVisualize
BU of 7vgn by Molmil
Crystal structure of CmnC
Descriptor: 2-OXOGLUTARIC ACID, ACETATE ION, CmnC, ...
Authors:Huang, S.J, Hsiao, Y.H, Lin, E.C, Lee, Y.C, Zheng, Y.Z, Chang, C.Y.
Deposit date:2021-09-17
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal structure of the alpha-ketoglutarate-dependent non-heme iron oxygenase CmnC in capreomycin biosynthesis and its engineering to catalyze hydroxylation of the substrate enantiomer.
Front Chem, 10, 2022
7VGL
DownloadVisualize
BU of 7vgl by Molmil
Crystal structure of CmnC
Descriptor: ACETATE ION, CmnC
Authors:Hsiao, Y.H, Huang, S.J, Lin, E.C, Lee, Y.C, Zheng, Y.Z, Chang, C.Y.
Deposit date:2021-09-17
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Crystal structure of the alpha-ketoglutarate-dependent non-heme iron oxygenase CmnC in capreomycin biosynthesis and its engineering to catalyze hydroxylation of the substrate enantiomer.
Front Chem, 10, 2022
3V15
DownloadVisualize
BU of 3v15 by Molmil
Crystal structure of the Fe(II)/alpha-ketoglutarate dependent taurine dioxygenase from Pseudomonas putida KT2440
Descriptor: Alpha-ketoglutarate-dependent taurine dioxygenase
Authors:Knauer, S.H, Dobbek, H.
Deposit date:2011-12-09
Release date:2012-01-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Fe(II) / alpha-ketoglutarate dependent taurine dioxygenases from Pseudomonas putida and Escherichia coli are tetramers
Febs J., 279, 2012
3V17
DownloadVisualize
BU of 3v17 by Molmil
Crystal structure of the Fe(II)/alpha-ketoglutarate dependent taurine dioxygenase from Pseudomonas putida KT2440
Descriptor: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent taurine dioxygenase
Authors:Knauer, S.H, Dobbek, H.
Deposit date:2011-12-09
Release date:2012-01-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:The Fe(II) / alpha-ketoglutarate dependent taurine dioxygenases from Pseudomonas putida and Escherichia coli are tetramers
Febs J., 279, 2012
2Q4A
DownloadVisualize
BU of 2q4a by Molmil
Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At3g21360
Descriptor: Clavaminate synthase-like protein At3g21360, FE (III) ION, SULFATE ION
Authors:Levin, E.J, Kondrashov, D.A, Wesenberg, G.E, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2007-05-31
Release date:2007-06-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Ensemble refinement of protein crystal structures: validation and application.
Structure, 15, 2007
3PVJ
DownloadVisualize
BU of 3pvj by Molmil
Crystal structure of the Fe(II)/alpha-ketoglutarate dependent taurine dioxygenase from Pseudomonas putida KT2440
Descriptor: Alpha-ketoglutarate-dependent taurine dioxygenase, CHLORIDE ION
Authors:Knauer, S.H, Spiegelhauer, O, Schwarzinger, S, Haenzelmann, P, Dobbek, H.
Deposit date:2010-12-07
Release date:2011-12-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Biochemical and structural characterization of the Fe(II)/alpha-ketoglutarate dependent taurine dioxygenase from Pseudomonas putida KT2440
To be Published
1DS1
DownloadVisualize
BU of 1ds1 by Molmil
CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE IN COMPLEX WITH FE(II) AND 2-OXOGLUTARATE
Descriptor: 2-OXOGLUTARIC ACID, CLAVAMINATE SYNTHASE 1, FE (II) ION, ...
Authors:Zhang, Z.H, Ren, J, Stammers, D.K, Baldwin, J.E, Harlos, K, Schofield, C.J.
Deposit date:2000-01-06
Release date:2000-07-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Structural origins of the selectivity of the trifunctional oxygenase clavaminic acid synthase.
Nat.Struct.Biol., 7, 2000
1DRY
DownloadVisualize
BU of 1dry by Molmil
CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE IN COMPLEX WITH FE(II), 2-OXOGLUTARATE AND N-ALPHA-L-ACETYL ARGININE
Descriptor: 2-OXOGLUTARIC ACID, CLAVAMINATE SYNTHASE 1, FE (II) ION, ...
Authors:Zhang, Z.H, Ren, J, Stammers, D.K, Baldwin, J.E, Harlos, K, Schofield, C.J.
Deposit date:2000-01-06
Release date:2000-07-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural origins of the selectivity of the trifunctional oxygenase clavaminic acid synthase.
Nat.Struct.Biol., 7, 2000
1DRT
DownloadVisualize
BU of 1drt by Molmil
CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE IN COMPLEX WITH FE(II), 2-OXOGLUTARATE AND PROCLAVAMINIC ACID
Descriptor: 2-OXOGLUTARIC ACID, 5-AMINO-3-HYDROXY-2-(2-OXO-AZETIDIN-1-YL)-PENTANOIC ACID, CLAVAMINATE SYNTHASE 1, ...
Authors:Zhang, Z.H, Ren, J, Stammers, D.K, Baldwin, J.E, Harlos, K, Schofield, C.J.
Deposit date:2000-01-06
Release date:2000-07-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural origins of the selectivity of the trifunctional oxygenase clavaminic acid synthase.
Nat.Struct.Biol., 7, 2000
1DS0
DownloadVisualize
BU of 1ds0 by Molmil
CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE
Descriptor: ACETATE ION, CLAVAMINATE SYNTHASE 1, SULFATE ION
Authors:Zhang, Z.H, Ren, J, Stammers, D.K, Baldwin, J.E, Harlos, K, Schofield, C.J.
Deposit date:2000-01-06
Release date:2000-07-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural origins of the selectivity of the trifunctional oxygenase clavaminic acid synthase.
Nat.Struct.Biol., 7, 2000
7Y5I
DownloadVisualize
BU of 7y5i by Molmil
Crystal structure of CmnC in complex with L-homoarginine
Descriptor: ARGININE, CmnC, FE (III) ION, ...
Authors:Hsiao, Y.H, Huang, S.J, Lin, E.C, Lee, Y.C, Chang, C.Y.
Deposit date:2022-06-17
Release date:2023-07-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Crystal structure of the alpha-ketoglutarate-dependent non-heme iron oxygenase CmnC in capreomycin biosynthesis and its engineering to catalyze hydroxylation of the substrate enantiomer.
Front Chem, 10, 2022

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon