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5MKI
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Crystal structure of SmAP (LSm) protein from Methanococcus vannielii
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, Like-Sm ribonucleoprotein core
Authors:Nikulin, A.D, Lekontseva, N.V, Tishchenko, S.V.
Deposit date:2016-12-05
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.048 Å)
Cite:Crystal structures and RNA-binding properties of Lsm proteins from archaea Sulfolobus acidocaldarius and Methanococcus vannielii: Similarity and difference of the U-binding mode.
Biochimie, 175, 2020
5MKN
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Crystal structure of SmAP (LSm) protein from Methanococcus vannielii
Descriptor: Like-Sm ribonucleoprotein core, TETRAETHYLENE GLYCOL, URIDINE-5'-MONOPHOSPHATE
Authors:Nikulin, A.D, Lekontseva, N.V, Tishchenko, S.V, Kravchenko, O.V.
Deposit date:2016-12-05
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of SmAP (LSm) protein from Methanococcus vannielii in complex with URIDINE-5'-MONOPHOSPHATE
To Be Published
5MKL
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BU of 5mkl by Molmil
Crystal structure of SmAP (LSm) protein from Sulfolobus acidocaldarius
Descriptor: Sm ribonucleo
Authors:Nikulin, A.D, Lekontseva, N.V, Tishchenko, S.V.
Deposit date:2016-12-05
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.086 Å)
Cite:Crystal structures and RNA-binding properties of Lsm proteins from archaea Sulfolobus acidocaldarius and Methanococcus vannielii: Similarity and difference of the U-binding mode.
Biochimie, 175, 2020
1I5L
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BU of 1i5l by Molmil
CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNA
Descriptor: 5'-R(*UP*UP*U)-3', PUTATIVE SNRNP SM-LIKE PROTEIN AF-SM1, URIDINE
Authors:Toro, I, Thore, S, Mayer, C, Basquin, J, Seraphin, B, Suck, D.
Deposit date:2001-02-28
Release date:2001-08-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:RNA binding in an Sm core domain: X-ray structure and functional analysis of an archaeal Sm protein complex.
EMBO J., 20, 2001
1I81
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CRYSTAL STRUCTURE OF A HEPTAMERIC LSM PROTEIN FROM METHANOBACTERIUM THERMOAUTOTROPHICUM
Descriptor: PUTATIVE SNRNP SM-LIKE PROTEIN
Authors:Collins, B.M, Harrop, S.J, Kornfeld, G.D, Dawes, I.W, Curmi, P.M.G, Mabbutt, B.C.
Deposit date:2001-03-12
Release date:2001-03-28
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a heptameric Sm-like protein complex from archaea: implications for the structure and evolution of snRNPs.
J.Mol.Biol., 309, 2001
1I8F
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THE CRYSTAL STRUCTURE OF A HEPTAMERIC ARCHAEAL SM PROTEIN: IMPLICATIONS FOR THE EUKARYOTIC SNRNP CORE
Descriptor: GLYCEROL, PUTATIVE SNRNP SM-LIKE PROTEIN
Authors:Mura, C, Cascio, D, Sawaya, M.R, Eisenberg, D.
Deposit date:2001-03-14
Release date:2001-05-16
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The crystal structure of a heptameric archaeal Sm protein: Implications for the eukaryotic snRNP core.
Proc.Natl.Acad.Sci.USA, 98, 2001
1I4K
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CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS AT 2.5A RESOLUTION
Descriptor: CITRIC ACID, PUTATIVE SNRNP SM-LIKE PROTEIN
Authors:Toro, I, Thore, S, Mayer, C, Basquin, J, Seraphin, B, Suck, D.
Deposit date:2001-02-22
Release date:2001-08-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:RNA binding in an Sm core domain: X-ray structure and functional analysis of an archaeal Sm protein complex.
EMBO J., 20, 2001
1JBM
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Heptameric crystal structure of Mth649, an Sm-like archaeal protein from Methanobacterium thermautotrophicum
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, PUTATIVE SNRNP SM-LIKE PROTEIN
Authors:Mura, C, Eisenberg, D.
Deposit date:2001-06-06
Release date:2003-03-25
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The oligomerization and ligand-binding properties of Sm-like archaeal proteins (SmAPs)
Protein Sci., 12, 2003
1JRI
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BU of 1jri by Molmil
The Crystal Structure of an Sm-like Archaeal Protein with Two Heptamers in the Asymmetric Unit.
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Sm-like Archaeal Protein 1 (SmAP1)
Authors:Mura, C, Eisenberg, D.
Deposit date:2001-08-13
Release date:2002-02-13
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The oligomerization and ligand-binding properties of Sm-like archaeal proteins (SmAPs)
Protein Sci., 12, 2003
1LNX
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Crystal structure of the P.aerophilum SmAP1 heptamer in a new crystal form (C2221)
Descriptor: ACETIC ACID, GLYCEROL, URIDINE, ...
Authors:Mura, C, Kozhukhovsky, A, Eisenberg, D.
Deposit date:2002-05-04
Release date:2003-03-25
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The oligomerization and ligand-binding properties of Sm-like archaeal proteins (SmAPs)
Protein Sci., 12, 2003
1LJO
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CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM2) FROM ARCHAEOGLOBUS FULGIDUS AT 1.95A RESOLUTION
Descriptor: ACETIC ACID, Archaeal Sm-like protein AF-Sm2, CADMIUM ION
Authors:Toro, I, Basquin, J, Teo-Dreher, H, Suck, D.
Deposit date:2002-04-22
Release date:2002-07-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Archaeal Sm proteins form heptameric and hexameric complexes: crystal structures of the Sm1 and Sm2 proteins from the hyperthermophile Archaeoglobus fulgidus.
J.Mol.Biol., 320, 2002
1LOJ
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BU of 1loj by Molmil
Crystal structure of a Methanobacterial Sm-like archaeal protein (SmAP1) bound to uridine-5'-monophosphate (UMP)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, URIDINE, URIDINE-5'-MONOPHOSPHATE, ...
Authors:Mura, C, Kozhukhovsky, A, Eisenberg, D.
Deposit date:2002-05-06
Release date:2003-03-25
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The oligomerization and ligand-binding properties of Sm-like archaeal proteins (SmAPs)
Protein Sci., 12, 2003
1M8V
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BU of 1m8v by Molmil
Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer
Descriptor: 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3', CALCIUM ION, PUTATIVE SNRNP SM-LIKE PROTEIN, ...
Authors:Thore, S, Mayer, C, Sauter, C, Weeks, S, Suck, D.
Deposit date:2002-07-26
Release date:2003-02-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Pyrococcus abyssii Sm core and its Complex with RNA: Common Features of RNA-binding in Archaea and Eukarya
J.Biol.Chem., 278, 2003
1MGQ
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BU of 1mgq by Molmil
CRYSTAL STRUCTURE OF A HEPTAMERIC SM-LIKE PROTEIN FROM METHANOBACTERIUM THERMOAUTOTROPHICUM
Descriptor: SM-LIKE PROTEIN
Authors:Collins, B.M, Naidoo, N, Harrop, S.J, Curmi, P.M.G, Mabbutt, B.C.
Deposit date:2002-08-16
Release date:2002-12-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Refined Structure of Sm-Like Protein Heptamer from Methanobacterium thermoautotrophicum
To be published
4F7U
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BU of 4f7u by Molmil
The 6S snRNP assembly intermediate
Descriptor: HEXAETHYLENE GLYCOL, Methylosome subunit pICln, Small nuclear ribonucleoprotein E, ...
Authors:Grimm, C, Pelz, J.P.
Deposit date:2012-05-16
Release date:2013-01-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.898 Å)
Cite:Structural Basis of Assembly Chaperone- Mediated snRNP Formation.
Mol.Cell, 49, 2013
4V98
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The 8S snRNP Assembly Intermediate
Descriptor: CG10419, Icln, LD23602p, ...
Authors:Grimm, C, Pelz, J.P, Schindelin, H, Diederichs, K, Kuper, J, Kisker, C.
Deposit date:2012-05-15
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural Basis of Assembly Chaperone- Mediated snRNP Formation.
Mol.Cell, 49, 2013
6V4X
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BU of 6v4x by Molmil
Cryo-EM structure of an active human histone pre-mRNA 3'-end processing machinery at 3.2 Angstrom resolution
Descriptor: Cleavage and polyadenylation specificity factor subunit 2, Cleavage and polyadenylation specificity factor subunit 3, Small nuclear ribonucleoprotein E, ...
Authors:Sun, Y, Zhang, Y, Walz, T, Tong, L.
Deposit date:2019-12-02
Release date:2020-02-19
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of an active human histone pre-mRNA 3'-end processing machinery.
Science, 367, 2020
4C8Q
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BU of 4c8q by Molmil
Crystal structure of the yeast Lsm1-7-Pat1 complex
Descriptor: COBALT (II) ION, DNA TOPOISOMERASE 2-ASSOCIATED PROTEIN PAT1, SM-LIKE PROTEIN LSM1, ...
Authors:Sharif, H, Conti, E.
Deposit date:2013-10-01
Release date:2013-10-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.698 Å)
Cite:Architecture of the Lsm1-7-Pat1 Complex: A Conserved Assembly in Eukaryotic Mrna Turnover
Cell Rep., 5, 2013
4N0A
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BU of 4n0a by Molmil
Crystal structure of Lsm2-3-Pat1C complex from Saccharomyces cerevisiae
Descriptor: DNA topoisomerase 2-associated protein PAT1, U6 snRNA-associated Sm-like protein LSm2, U6 snRNA-associated Sm-like protein LSm3
Authors:Wu, D.H.
Deposit date:2013-10-01
Release date:2013-12-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Lsm2 and Lsm3 bridge the interaction of the Lsm1-7 complex with Pat1 for decapping activation
Cell Res., 24, 2014
4PJO
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BU of 4pjo by Molmil
Minimal U1 snRNP
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, ETHANOL, ...
Authors:Kondo, Y, Oubridge, C, van Roon, A.M, Nagai, K.
Deposit date:2014-05-12
Release date:2014-12-31
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structure of human U1 snRNP, a small nuclear ribonucleoprotein particle, reveals the mechanism of 5' splice site recognition.
Elife, 4, 2015
5XJS
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BU of 5xjs by Molmil
Crystal Structure of the Gemin2-binding domain of SMN, Gemin2dN39 in Complex with SmD1(1-82)/D2/F/E from Human
Descriptor: Gem-associated protein 2, Small nuclear ribonucleoprotein E, Small nuclear ribonucleoprotein F, ...
Authors:Yi, H, Zhang, R.
Deposit date:2017-05-04
Release date:2018-07-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.38 Å)
Cite:Negative cooperativity between Gemin2 and RNA provides insights into RNA selection and the SMN complex's release in snRNP assembly.
Nucleic Acids Res., 2019
5XJT
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Crystal Structure of the Gemin2-binding domain of SMN, Gemin2 in Complex with SmD1(1-82)/D2.R61A/F/E/G from Human
Descriptor: Gem-associated protein 2, Small nuclear ribonucleoprotein E, Small nuclear ribonucleoprotein F, ...
Authors:Yi, H, Zhang, R.
Deposit date:2017-05-04
Release date:2018-07-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Structures of 7S mutant complexes
To Be Published
5XJR
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Crystal Structure of the Gemin2-binding domain of SMN, Gemin2dN39 in Complex with SmD1(1-82)/D2/F/E/G from Human
Descriptor: Gem-associated protein 2, Small nuclear ribonucleoprotein E, Small nuclear ribonucleoprotein F, ...
Authors:Yi, H, Zhang, R.
Deposit date:2017-05-04
Release date:2018-07-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:Negative cooperativity between Gemin2 and RNA provides insights into RNA selection and the SMN complex's release in snRNP assembly.
Nucleic Acids Res., 2019
5XJQ
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Crystal Structure of the Gemin2-binding domain of SMN, Gemin2 in Complex with SmD1(1-82)/D2/F/E/G from Human
Descriptor: Gem-associated protein 2, Small nuclear ribonucleoprotein E, Small nuclear ribonucleoprotein F, ...
Authors:Yi, H, Zhang, R.
Deposit date:2017-05-04
Release date:2018-07-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.28 Å)
Cite:Negative cooperativity between Gemin2 and RNA provides insights into RNA selection and the SMN complex's release in snRNP assembly.
Nucleic Acids Res., 2019
5XJL
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Crystal Structure of the Gemin2-binding domain of SMN, Gemin2 in Complex with SmD1/D2/F/E/G from Human
Descriptor: Gem-associated protein 2, Small nuclear ribonucleoprotein E, Small nuclear ribonucleoprotein F, ...
Authors:Zhang, R.
Deposit date:2017-05-02
Release date:2018-05-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of a key intermediate of the SMN complex reveals Gemin2's crucial function in snRNP assembly
Cell, 146, 2011

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PDB entries from 2024-03-27

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