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5MLU
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BU of 5mlu by Molmil
Crystal structure of the PFV GAG CBS bound to a mononucleosome
Descriptor: DNA (145-MER), Histone H2A type 1, Histone H2B, ...
Authors:Pye, V.E, Maskell, D.P, Lesbats, P, Cherepanov, P.
Deposit date:2016-12-07
Release date:2017-05-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for spumavirus GAG tethering to chromatin.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4CAY
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BU of 4cay by Molmil
Crystal structure of a human Anp32e-H2A.Z-H2B complex
Descriptor: ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 FAMILY MEMBER E, HISTONE H2A.Z, HISTONE H2B TYPE 1-J
Authors:Obri, A, Ouararhni, K, Papin, C, Diebold, M.-L, Padmanabhan, K, Marek, M, Stoll, I, Roy, L, Reilly, P.T, Mak, T.W, Dimitrov, S, Romier, C, Hamiche, A.
Deposit date:2013-10-09
Release date:2014-01-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Anp32E is a Histone Chaperone that Removes H2A.Z from Chromatin
Nature, 648, 2014
4CSR
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BU of 4csr by Molmil
High resolution crystal structure of the histone fold dimer (NF-YB)-(NF-YC)
Descriptor: GLYCEROL, NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA, NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Authors:Gnesutta, N, Cocolo, S, Mantovani, R, Bolognesi, M, Nardini, M.
Deposit date:2014-03-09
Release date:2015-03-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High Resolution Crystal Structure of the Histone Fold Dimer (NF-Yb)-(NF-Yc)
To be Published
5NL0
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BU of 5nl0 by Molmil
Crystal structure of a 197-bp palindromic 601L nucleosome in complex with linker histone H1
Descriptor: DNA (197-MER), Histone H1.0-B, Histone H2A type 1, ...
Authors:Garcia-Saez, I, Petosa, C, Dimitrov, S.
Deposit date:2017-04-03
Release date:2017-05-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (5.4 Å)
Cite:Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1.
Mol. Cell, 66, 2017
2CV5
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BU of 2cv5 by Molmil
Crystal structure of human nucleosome core particle
Descriptor: CHLORIDE ION, DNA (146-MER), Histone H2A.a, ...
Authors:Tsunaka, Y, Kajimura, N, Tate, S, Morikawa, K.
Deposit date:2005-05-31
Release date:2005-06-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Alteration of the nucleosomal DNA path in the crystal structure of a human nucleosome core particle
Nucleic Acids Res., 33, 2005
4EO5
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BU of 4eo5 by Molmil
Yeast Asf1 bound to H3/H4G94P mutant
Descriptor: ACETATE ION, GLYCEROL, Histone H3.2, ...
Authors:Scorgie, J.K, Churchill, M.E.
Deposit date:2012-04-13
Release date:2012-06-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The conformational flexibility of the C-terminus of histone H4 promotes histone octamer and nucleosome stability and yeast viability.
Epigenetics Chromatin, 5, 2012
7ZSA
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BU of 7zsa by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (complex B)
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Wang, H, Cramer, P.
Deposit date:2022-05-06
Release date:2022-11-16
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structures of transcription preinitiation complex engaged with the +1 nucleosome.
Nat.Struct.Mol.Biol., 30, 2023
7ZSB
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BU of 7zsb by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP, complex C
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Wang, H, Cramer, P.
Deposit date:2022-05-06
Release date:2022-11-16
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Structures of transcription preinitiation complex engaged with the +1 nucleosome.
Nat.Struct.Mol.Biol., 30, 2023
7ZS9
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BU of 7zs9 by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A)
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Wang, H, Cramer, P.
Deposit date:2022-05-06
Release date:2022-11-16
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structures of transcription preinitiation complex engaged with the +1 nucleosome.
Nat.Struct.Mol.Biol., 30, 2023
8AAG
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BU of 8aag by Molmil
H1-bound palindromic nucleosome, state 1
Descriptor: DNA/RNA (185-MER), Histone H1.0-B, Histone H2A type 1, ...
Authors:Alegrio Louro, J, Beinsteiner, B, Cheng, T.C, Patel, A.K.M, Boopathi, R, Angelov, D, Hamiche, A, Bednar, J, Kale, S, Dimitrov, S, Klaholz, B.
Deposit date:2022-07-01
Release date:2022-12-14
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Nucleosome dyad determines the H1 C-terminus collapse on distinct DNA arms.
Structure, 31, 2023
3KWQ
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BU of 3kwq by Molmil
Structural characterization of H3K56Q nucleosomes and nucleosomal arrays
Descriptor: DNA (146-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Lilyestrom, W.G, Clark, N.
Deposit date:2009-12-01
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural characterization of H3K56Q nucleosomes and nucleosomal arrays.
Biochim.Biophys.Acta, 1799
3KUY
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BU of 3kuy by Molmil
DNA Stretching in the Nucleosome Facilitates Alkylation by an Intercalating Antitumor Agent
Descriptor: 2-[(2R)-oxiran-2-ylmethyl]-1H-benzo[de]isoquinoline-1,3(2H)-dione, DNA (145-MER), Histone H2A, ...
Authors:Wu, B, Davey, C.A.
Deposit date:2009-11-28
Release date:2010-01-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:DNA stretching in the nucleosome facilitates alkylation by an intercalating antitumour agent
Nucleic Acids Res., 38, 2010
3KXB
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BU of 3kxb by Molmil
Structural characterization of H3K56Q nucleosomes and nucleosomal arrays
Descriptor: Histone H2A, Histone H2B 1.1, Histone H3.2, ...
Authors:Clark, N.J, Lilyestrom, W.G.
Deposit date:2009-12-02
Release date:2010-06-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural characterization of H3K56Q nucleosomes and nucleosomal arrays.
Biochim.Biophys.Acta, 1799, 2010
3LJA
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BU of 3lja by Molmil
Using Soft X-Rays for a Detailed Picture of Divalent Metal Binding in the Nucleosome
Descriptor: 147mer DNA, Histone H2A, Histone H2B 1.1, ...
Authors:Wu, B, Davey, C.A.
Deposit date:2010-01-26
Release date:2010-04-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Using soft X-rays for a detailed picture of divalent metal binding in the nucleosome
J.Mol.Biol., 398, 2010
3LEL
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BU of 3lel by Molmil
Structural Insight into the Sequence-Dependence of Nucleosome Positioning
Descriptor: 147-MER DNA, Histone H2A, Histone H2B 1.1, ...
Authors:Wu, B, Vasudevan, D, Davey, C.A.
Deposit date:2010-01-15
Release date:2010-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural insight into the sequence dependence of nucleosome positioning
Structure, 18, 2010
2L5A
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BU of 2l5a by Molmil
Structural basis for recognition of centromere specific histone H3 variant by nonhistone Scm3
Descriptor: Histone H3-like centromeric protein CSE4, Protein SCM3, Histone H4
Authors:Zhou, Z, Feng, H, Zhou, B, Ghirlando, R, Hu, K, Zwolak, A, Jenkins, L, Xiao, H, Tjandra, N, Wu, C, Bai, Y.
Deposit date:2010-10-28
Release date:2011-03-16
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis for recognition of centromere histone variant CenH3 by the chaperone Scm3.
Nature, 472, 2011
4KHA
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BU of 4kha by Molmil
Structural basis of histone H2A-H2B recognition by the essential chaperone FACT
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, Histone H2A, ...
Authors:Hondele, M, Halbach, F, Hassler, M, Ladurner, A.G.
Deposit date:2013-04-30
Release date:2013-05-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis of histone H2A-H2B recognition by the essential chaperone FACT.
Nature, 499, 2013
5O9G
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BU of 5o9g by Molmil
Structure of nucleosome-Chd1 complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Chromo domain-containing protein 1, ...
Authors:Farnung, L, Vos, S.M, Wigge, C, Cramer, P.
Deposit date:2017-06-19
Release date:2017-10-11
Last modified:2017-11-01
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Nucleosome-Chd1 structure and implications for chromatin remodelling.
Nature, 550, 2017
4KGC
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BU of 4kgc by Molmil
Nucleosome Core Particle Containing (ETA6-P-CYMENE)-(1, 2-ETHYLENEDIAMINE)-RUTHENIUM
Descriptor: (ethane-1,2-diamine-kappa~2~N,N')[(1,2,3,4,5,6-eta)-1-methyl-4-(propan-2-yl)cyclohexane-1,2,3,4,5,6-hexayl]ruthenium, DNA (145-mer), Histone H2A, ...
Authors:Adhireksan, Z, Davey, C.A.
Deposit date:2013-04-29
Release date:2014-03-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Ligand substitutions between ruthenium-cymene compounds can control protein versus DNA targeting and anticancer activity
Nat Commun, 5, 2014
2F8N
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BU of 2f8n by Molmil
2.9 Angstrom X-ray structure of hybrid macroH2A nucleosomes
Descriptor: Core histone macro-H2A.1, Histone 3, H2ba, ...
Authors:Chakravarthy, S, Luger, K.
Deposit date:2005-12-02
Release date:2006-05-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Nucleosomes containing the histone domain of macroH2A: In vitro possibilities.
To be Published
4KUD
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BU of 4kud by Molmil
Crystal structure of N-terminal acetylated Sir3 BAH domain D205N mutant in complex with yeast nucleosome core particle
Descriptor: Histone H2A.2, Histone H2B.1, Histone H3, ...
Authors:Yang, D, Fang, Q, Wang, M, Ren, R, Wang, H, He, M, Sun, Y, Yang, N, Xu, R.M.
Deposit date:2013-05-22
Release date:2013-08-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.203 Å)
Cite:N alpha-acetylated Sir3 stabilizes the conformation of a nucleosome-binding loop in the BAH domain.
Nat.Struct.Mol.Biol., 20, 2013
2FJ7
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BU of 2fj7 by Molmil
Crystal structure of Nucleosome Core Particle Containing a Poly (dA.dT) Sequence Element
Descriptor: 147 bp DNA containing 16 bp poly dA element, 147 bp DNA containing 16 bp poly dT element, Histone H2B, ...
Authors:Bao, Y, White, C.L, Luger, K.
Deposit date:2005-12-31
Release date:2006-09-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Nucleosome Core Particles Containing a Poly(dA.dT) Sequence Element Exhibit a Locally Distorted DNA Structure.
J.Mol.Biol., 361, 2006
4LD9
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BU of 4ld9 by Molmil
Crystal structure of the N-terminally acetylated BAH domain of Sir3 bound to the nucleosome core particle
Descriptor: Histone H2A, Histone H2B 1.1, Histone H3.2, ...
Authors:Arnaudo, N, Fernandez, I.S, McLaughlin, S.H, Peak-Chew, S.Y, Rhodes, D, Martino, F.
Deposit date:2013-06-24
Release date:2013-08-14
Last modified:2013-09-18
Method:X-RAY DIFFRACTION (3.306 Å)
Cite:The N-terminal acetylation of Sir3 stabilizes its binding to the nucleosome core particle.
Nat.Struct.Mol.Biol., 20, 2013
5OMX
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BU of 5omx by Molmil
X-ray Structure of the H2A-N38C Nucleosome Core Particle
Descriptor: CHLORIDE ION, DNA (147-MER), Histone H2A, ...
Authors:Frouws, T.D, Richmond, T.J.
Deposit date:2017-08-02
Release date:2017-11-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Site-Specific Disulfide Crosslinked Nucleosomes with Enhanced Stability.
J. Mol. Biol., 430, 2018
5ONG
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BU of 5ong by Molmil
X-Ray crystal structure of a nucleosome core particle with its DNA site-specifically crosslinked to the histone octamer
Descriptor: CHLORIDE ION, DNA (147-MER), Histone H2A, ...
Authors:Frouws, T.D, Barth, P.D, Richmond, T.J.
Deposit date:2017-08-03
Release date:2017-11-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.797 Å)
Cite:Site-Specific Disulfide Crosslinked Nucleosomes with Enhanced Stability.
J. Mol. Biol., 430, 2018

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PDB entries from 2024-03-27

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