Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5ZNR
DownloadVisualize
BU of 5znr by Molmil
Crystal structure of PtSHL in complex with an H3K27me3 peptide
Descriptor: 17-mer peptide from Histone H3.2, SHORT LIFE family protein, SULFATE ION, ...
Authors:Lv, X, Du, J.
Deposit date:2018-04-10
Release date:2018-07-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.202 Å)
Cite:Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL.
Nat Commun, 9, 2018
2FSA
DownloadVisualize
BU of 2fsa by Molmil
Crystal structure of PHD finger-linker-bromodomain fragment of human BPTF in the H3(1-15)K4ME2 bound state
Descriptor: Histone H3(1-15)K4me2 peptide, ZINC ION, bromodomain PHD finger transcription factor
Authors:Li, H, Patel, D.J.
Deposit date:2006-01-21
Release date:2006-07-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF.
Nature, 442, 2006
3O7A
DownloadVisualize
BU of 3o7a by Molmil
Crystal structure of PHF13 in complex with H3K4me3
Descriptor: GLYCEROL, H3K4ME3 HISTONE 11MER-PEPTIDE, PHD finger protein 13 variant, ...
Authors:Bian, C.B, Lam, R, Xu, C, Bountra, C, Arrowsmith, C.H, Weigelt, J, Edwards, A.M, Bochkarev, A, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2010-07-30
Release date:2010-10-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:PHF13 is a molecular reader and transcriptional co-regulator of H3K4me2/3.
Elife, 5, 2016
5SVX
DownloadVisualize
BU of 5svx by Molmil
MORC3 CW in complex with histone H3K4me3
Descriptor: H3K4me3, MORC family CW-type zinc finger protein 3, ZINC ION
Authors:Tong, Q, Andrews, F.H, Kutateladze, T.G.
Deposit date:2016-08-08
Release date:2016-10-05
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Multivalent Chromatin Engagement and Inter-domain Crosstalk Regulate MORC3 ATPase.
Cell Rep, 16, 2016
2V89
DownloadVisualize
BU of 2v89 by Molmil
Crystal structure of RAG2-PHD finger in complex with H3K4me3 peptide at 1.1A resolution
Descriptor: HISTONE H3, VDJ RECOMBINATION-ACTIVATING PROTEIN 2, ZINC ION
Authors:Ramon-Maiques, S, Yang, W.
Deposit date:2007-08-03
Release date:2007-12-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Rag2 Phd Finger Couples Histone H3 Lysine 4 Trimethylation with V(D)J Recombination.
Nature, 450, 2007
4L58
DownloadVisualize
BU of 4l58 by Molmil
Crystal structure of the MLL5 PHD finger in complex with H3K4me3
Descriptor: Histone H3 peptide, Histone-lysine N-methyltransferase MLL5, ZINC ION
Authors:Tong, Q, Ali, M, Kutateladze, T.G.
Deposit date:2013-06-10
Release date:2013-06-26
Last modified:2013-07-24
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Molecular basis for chromatin binding and regulation of MLL5.
Proc.Natl.Acad.Sci.USA, 110, 2013
4YHZ
DownloadVisualize
BU of 4yhz by Molmil
Crystal structure of 304M3-B Fab in complex with H3K4me3 peptide
Descriptor: Fab Heavy Chain, Fab Light Chain, GLYCEROL, ...
Authors:Hattori, T, Dementieva, I.S, Montano, S.P, Koide, S.
Deposit date:2015-02-27
Release date:2016-02-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.304 Å)
Cite:Antigen clasping by two antigen-binding sites of an exceptionally specific antibody for histone methylation.
Proc.Natl.Acad.Sci.USA, 113, 2016
5TDW
DownloadVisualize
BU of 5tdw by Molmil
Set3 PHD finger in complex with histone H3K4me3
Descriptor: SET domain-containing protein 3, SODIUM ION, ZINC ION, ...
Authors:Andrews, F.H, Ali, M, Kutateladze, T.G.
Deposit date:2016-09-19
Release date:2016-10-19
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Insight into Recognition of Methylated Histone H3K4 by Set3.
J. Mol. Biol., 429, 2017
4L7X
DownloadVisualize
BU of 4l7x by Molmil
Crystal structure of the DIDO PHD finger in complex with H3K4me3
Descriptor: Death-inducer obliterator 1, Histone H3 peptide, ZINC ION
Authors:Tong, Q, Gatchalian, J, Kutateladze, T.G.
Deposit date:2013-06-14
Release date:2013-07-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Dido3 PHD Modulates Cell Differentiation and Division.
Cell Rep, 4, 2013
4MZG
DownloadVisualize
BU of 4mzg by Molmil
Crystal structure of human Spindlin1 bound to histone H3K4me3 peptide
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, ...
Authors:Su, X, Ding, X, Li, H.
Deposit date:2013-09-30
Release date:2014-03-26
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Molecular basis underlying histone H3 lysine-arginine methylation pattern readout by Spin/Ssty repeats of Spindlin1
Genes Dev., 28, 2014
2V83
DownloadVisualize
BU of 2v83 by Molmil
Crystal structure of RAG2-PHD finger in complex with H3K4me3 peptide
Descriptor: HISTONE H3, VDJ RECOMBINATION-ACTIVATING PROTEIN 2, ZINC ION
Authors:Ramon-Maiques, S, Yang, W.
Deposit date:2007-08-02
Release date:2007-12-11
Last modified:2019-02-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Plant Homeodomain Finger of Rag2 Recognizes Histone H3 Methylated at Both Lysine-4 and Arginine-2.
Proc.Natl.Acad.Sci.USA, 104, 2007
3MEA
DownloadVisualize
BU of 3mea by Molmil
Crystal structure of the SGF29 in complex with H3K4me3
Descriptor: Histone H3, SAGA-associated factor 29 homolog
Authors:Bian, C, Xu, C, Tempel, W, MacKenzie, F, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2010-03-31
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation.
Embo J., 30, 2011
3ME9
DownloadVisualize
BU of 3me9 by Molmil
Crystal structure of SGF29 in complex with H3K4me3 peptide
Descriptor: GLYCEROL, Histone H3, SAGA-associated factor 29 homolog, ...
Authors:Bian, C, Tempel, W, Xu, C, Guo, Y, Dong, A, Crombet, L, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2010-03-31
Release date:2010-04-28
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation.
Embo J., 30, 2011
3N9O
DownloadVisualize
BU of 3n9o by Molmil
ceKDM7A from C.elegans, complex with H3K4me3 peptide, H3K9me2 peptide and NOG
Descriptor: FE (II) ION, Histone H3 peptide, N-OXALYLGLYCINE, ...
Authors:Yang, Y, Hu, L, Wang, P, Hou, H, Chen, C.D, Xu, Y.
Deposit date:2010-05-31
Release date:2010-06-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.309 Å)
Cite:Structural insights into a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans
Cell Res., 20, 2010
3N9Q
DownloadVisualize
BU of 3n9q by Molmil
ceKDM7A from C.elegans, complex with H3K4me3 peptide, H3K27me2 peptide and NOG
Descriptor: FE (II) ION, Histone H3 peptide, N-OXALYLGLYCINE, ...
Authors:Yang, Y, Hu, L, Wang, P, Hou, H, Chen, C.D, Xu, Y.
Deposit date:2010-05-31
Release date:2010-06-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans
Cell Res., 20, 2010
3N9L
DownloadVisualize
BU of 3n9l by Molmil
ceKDM7A from C.elegans, complex with H3K4me3 peptide and NOG
Descriptor: FE (II) ION, Histone H3 peptide, N-OXALYLGLYCINE, ...
Authors:Yang, Y, Hu, L, Wang, P, Hou, H, Chen, C.D, Xu, Y.
Deposit date:2010-05-31
Release date:2010-06-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.796 Å)
Cite:Structural insights into a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans
Cell Res., 20, 2010
5YC4
DownloadVisualize
BU of 5yc4 by Molmil
Crystal structure of AL3 PHD finger bound to H3K4me3
Descriptor: Histone H3K4me3, PHD finger protein ALFIN-LIKE 3, ZINC ION
Authors:Zhao, S, Zhang, B, Li, H.
Deposit date:2017-09-06
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.697 Å)
Cite:Systematic Profiling of Histone Readers in Arabidopsis thaliana.
Cell Rep, 22, 2018
3KQI
DownloadVisualize
BU of 3kqi by Molmil
crystal structure of PHF2 PHD domain complexed with H3K4Me3 peptide
Descriptor: CHLORIDE ION, GLYCEROL, H3K4Me3 peptide, ...
Authors:Wen, H, Li, J.Z, Song, T, Lu, M, Lee, M.
Deposit date:2009-11-17
Release date:2010-02-02
Last modified:2019-02-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Recognition of histone H3K4 trimethylation by the plant homeodomain of PHF2 modulates histone demethylation.
J.Biol.Chem., 285, 2010
2M3H
DownloadVisualize
BU of 2m3h by Molmil
Structure of Dido PHD domain
Descriptor: Death-inducer obliterator 1, ZINC ION
Authors:Santiveri, C.M, Perez-Canadillas, J.M, Jimenez, M.
Deposit date:2013-01-19
Release date:2013-08-07
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR structure note: PHD domain from death inducer obliterator protein and its interaction with H3K4me3.
J.Biomol.Nmr, 56, 2013
3MP1
DownloadVisualize
BU of 3mp1 by Molmil
Complex structure of Sgf29 and trimethylated H3K4
Descriptor: ACETATE ION, H3K4me3 peptide, Maltose-binding periplasmic protein,LINKER,SAGA-associated factor 29, ...
Authors:Li, J, Ruan, J, Wu, M, Xue, X, Zang, J.
Deposit date:2010-04-24
Release date:2011-05-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation
Embo J., 30, 2011
2K16
DownloadVisualize
BU of 2k16 by Molmil
Solution structure of the free TAF3 PHD domain
Descriptor: Transcription initiation factor TFIID subunit 3, ZINC ION
Authors:van Ingen, H, van Schaik, F.M.A, Wienk, H, Timmers, M, Boelens, R.
Deposit date:2008-02-22
Release date:2008-07-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Recognition of the H3K4me3 mark by the TAF3-PHD finger
To be Published
2YYR
DownloadVisualize
BU of 2yyr by Molmil
Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide
Descriptor: H3K4Me3 peptide, Pygopus homolog 1, ZINC ION
Authors:Nakamura, Y, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-01
Release date:2008-05-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide
To be Published
7ZMX
DownloadVisualize
BU of 7zmx by Molmil
Crystal structure of the Plant Homeodomain (PHD) of human ING3
Descriptor: CALCIUM ION, Inhibitor of growth protein 3, ZINC ION
Authors:Ferreras, M.O, Medrano, F.J, Blanco, F.J.
Deposit date:2022-04-20
Release date:2023-05-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural analysis of ING3 protein and histone H3 binding.
Int.J.Biol.Macromol., 242, 2023
4AFL
DownloadVisualize
BU of 4afl by Molmil
The crystal structure of the ING4 dimerization domain reveals the functional organization of the ING family of chromatin binding proteins.
Descriptor: INHIBITOR OF GROWTH PROTEIN 4
Authors:Culurgioni, S, Munoz, I.G, Moreno, A, Palacios, A, Villate, M, Palmero, I, Montoya, G, Blanco, F.J.
Deposit date:2012-01-19
Release date:2012-02-22
Last modified:2012-07-11
Method:X-RAY DIFFRACTION (2.275 Å)
Cite:Crystal Structure of Inhibitor of Growth 4 (Ing4) Dimerization Domain Reveals Functional Organization of Ing Family of Chromatin-Binding Proteins.
J.Biol.Chem., 287, 2012
3KV5
DownloadVisualize
BU of 3kv5 by Molmil
Structure of KIAA1718, human Jumonji demethylase, in complex with N-oxalylglycine
Descriptor: FE (II) ION, JmjC domain-containing histone demethylation protein 1D, N-OXALYLGLYCINE, ...
Authors:Horton, J.R, Upadhyay, A.K, Qi, H.H, Zhang, X, Shi, Y, Cheng, X.
Deposit date:2009-11-29
Release date:2009-12-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Enzymatic and structural insights for substrate specificity of a family of jumonji histone lysine demethylases.
Nat.Struct.Mol.Biol., 17, 2010

217705

數據於2024-03-27公開中

PDB statisticsPDBj update infoContact PDBjnumon