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2KN5
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BU of 2kn5 by Molmil
A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family
Descriptor: Ubiquitin
Authors:Friedland, G.D.
Deposit date:2009-08-14
Release date:2009-11-17
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:A correspondence between solution-state dynamics of an individual protein and the sequence and conformational diversity of its family.
PLOS COMPUT.BIOL., 5, 2009
2KX0
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BU of 2kx0 by Molmil
the solution structure of UBB+1, frameshift mutant of ubiquitin B
Descriptor: ubiquitin B
Authors:Ko, S.
Deposit date:2010-04-22
Release date:2010-09-08
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:the solution structure of UBB+1, frameshift mutant of ubiquitin B
To be Published
2KOX
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BU of 2kox by Molmil
NMR residual dipolar couplings identify long range correlated motions in the backbone of the protein ubiquitin
Descriptor: Ubiquitin
Authors:Fenwick, R.B, Richter, B, Lee, D, Walter, K.F.A, Milovanovic, D, Becker, S, Lakomek, N.A, Griesinger, C, Salvatella, X.
Deposit date:2009-10-02
Release date:2011-06-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Weak Long-Range Correlated Motions in a Surface Patch of Ubiquitin Involved in Molecular Recognition
J.Am.Chem.Soc., 2011
2KX3
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BU of 2kx3 by Molmil
The solution structure of the mutant of UBL domain of UBLCP1, I5M
Descriptor: Ubiquitin-like domain-containing CTD phosphatase 1
Authors:Lee, N, Ko, S.
Deposit date:2010-04-23
Release date:2011-04-27
Last modified:2021-11-10
Method:SOLUTION NMR
Cite:The solution structure of the mutant of UBL domain of UBLCP1, I5M
To be Published
2KWU
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BU of 2kwu by Molmil
Solution Structure of UBM2 of murine Polymerase iota in Complex with Ubiquitin
Descriptor: DNA polymerase iota, Ubiquitin
Authors:Burschowsky, D, Rudolf, F, Rabut, G, Herrmann, T, Peter, M, Wider, G.
Deposit date:2010-04-19
Release date:2010-10-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural analysis of the conserved ubiquitin-binding motifs (UBMs) of the translesion polymerase iota in complex with ubiquitin.
J.Biol.Chem., 286, 2011
2KWV
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BU of 2kwv by Molmil
Solution Structure of UBM1 of murine Polymerase iota in Complex with Ubiquitin
Descriptor: DNA polymerase iota, Ubiquitin
Authors:Burschowsky, D, Rudolf, F, Rabut, G, Herrmann, T, Peter, M, Wider, G.
Deposit date:2010-04-20
Release date:2010-10-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural analysis of the conserved ubiquitin-binding motifs (UBMs) of the translesion polymerase iota in complex with ubiquitin.
J.Biol.Chem., 286, 2011
2L0F
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BU of 2l0f by Molmil
Solution NMR structure of human polymerase iota UBM2 (P692A mutant) in complex with ubiquitin
Descriptor: DNA polymerase iota, Ubiquitin
Authors:Cui, G, Benirschke, R, Mer, G.
Deposit date:2010-07-01
Release date:2010-11-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Basis of Ubiquitin Recognition by Translesion Synthesis DNA Polymerase iota.
Biochemistry, 49, 2010
2LJ5
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BU of 2lj5 by Molmil
Description of the Structural fluctuations of proteins from structure-based calculations of Residual dipolar couplings
Descriptor: Ubiquitin
Authors:De Simone, A, Montalvao, R, Vendruscolo, M.
Deposit date:2011-09-06
Release date:2012-07-18
Last modified:2012-08-08
Method:SOLUTION NMR
Cite:Determination of structural fluctuations of proteins from structure-based calculations of residual dipolar couplings.
J.Biomol.Nmr, 53, 2012
2LRW
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BU of 2lrw by Molmil
Solution structure of a ubiquitin-like protein from Trypanosoma brucei
Descriptor: Ubiquitin, putative
Authors:Wang, R, Wang, T, Liao, S, Zhang, J, Tu, X.
Deposit date:2012-04-13
Release date:2013-04-24
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of a ubiqutin-like protein from Trypanosoma bucei
To be Published
2LD9
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BU of 2ld9 by Molmil
Backbone Structure of Ubiquitin determined using Backbone amide NOEs and Backbone N-H and N-C RDCs
Descriptor: Ubiquitin
Authors:Kumar, D, Hosur, R.
Deposit date:2011-05-18
Release date:2011-06-08
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:AUTOBA: Automation of Backbone Assignment from HN(C)N Suite of Experiments
To be Published
2L3Z
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BU of 2l3z by Molmil
Proton-Detected 4D DREAM Solid-State NMR Structure of Ubiquitin
Descriptor: Ubiquitin
Authors:Huber, M, Hiller, S, Schanda, P, Ernst, M, Bockmann, A, Verel, R, Meier, B.H.
Deposit date:2010-09-27
Release date:2011-02-16
Last modified:2011-07-13
Method:SOLID-STATE NMR
Cite:A Proton-Detected 4D Solid-State NMR Experiment for Protein Structure Determination.
Chemphyschem, 12, 2011
8ADB
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BU of 8adb by Molmil
Viral tegument-like DUBs
Descriptor: CITRIC ACID, Polyubiquitin-C, Wc-VDT1, ...
Authors:Erven, I, Abraham, E.T, Hermanns, T, Baumann, U, Hofmann, K.
Deposit date:2022-07-08
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:A widely distributed family of eukaryotic and bacterial deubiquitinases related to herpesviral large tegument proteins.
Nat Commun, 13, 2022
8A67
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BU of 8a67 by Molmil
Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with matured synthetic nanobody NbSL3.3Q (3rd generation)
Descriptor: CHLORIDE ION, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Lange, S.M, Kulathu, Y.
Deposit date:2022-06-16
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Comprehensive approach to study branched ubiquitin chains reveals roles for K48-K63 branches in VCP/p97-related processes
Biorxiv, 2023
8HM1
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BU of 8hm1 by Molmil
crystal structure of human ubiquitin-like protein from Bacteroides fragilis
Descriptor: 1,2-ETHANEDIOL, Putative ubiquitin
Authors:Tong, M, Chen, Z, Gao, X.
Deposit date:2022-12-02
Release date:2023-11-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Bacteroides fragilis ubiquitin homologue drives intraspecies bacterial competition in the gut microbiome.
Nat Microbiol, 9, 2024
8HTF
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BU of 8htf by Molmil
Crystal structure of an effector in complex with ubiquitin
Descriptor: NAD(+)--protein-threonine ADP-ribosyltransferase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Ubiquitin-40S ribosomal protein S27a (Fragment)
Authors:Tan, J, Wang, X, Zhou, Y, Zhu, Y.
Deposit date:2022-12-21
Release date:2023-11-22
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.151 Å)
Cite:Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
8HTD
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BU of 8htd by Molmil
Crystal structure of an effector from Chromobacterium violaceum in complex with ubiquitin
Descriptor: NAD(+)--protein-threonine ADP-ribosyltransferase, Ubiquitin
Authors:Tan, J, Wang, X, Zhou, Y, Zhu, Y.
Deposit date:2022-12-21
Release date:2023-11-22
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.848 Å)
Cite:Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
8HTE
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BU of 8hte by Molmil
Crystal structure of an effector mutant in complex with ubiquitin
Descriptor: GLYCEROL, NAD(+)--protein-threonine ADP-ribosyltransferase, NICOTINAMIDE, ...
Authors:Tan, J, Wang, X, Zhou, Y, Zhu, Y.
Deposit date:2022-12-21
Release date:2023-11-22
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.307 Å)
Cite:Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
8HTC
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BU of 8htc by Molmil
Crystal structure of a SeMet-labeled effector from Chromobacterium violaceum in complex with Ubiquitin
Descriptor: NAD(+)--protein-threonine ADP-ribosyltransferase, Ubiquitin-40S ribosomal protein S27a (Fragment)
Authors:Tan, J, Wang, X, Zhou, Y, Zhu, Y.
Deposit date:2022-12-21
Release date:2023-11-22
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
8IPJ
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BU of 8ipj by Molmil
Crystal structure of the Legionella effector protein MavL with ADPR-Ub
Descriptor: MavL, Ubiquitin, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
Authors:Ouyang, S, Guan, H.
Deposit date:2023-03-14
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:Crystal structure of the Legionella effector protein MavL with ADPR-Ub
To Be Published
1CMX
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BU of 1cmx by Molmil
STRUCTURAL BASIS FOR THE SPECIFICITY OF UBIQUITIN C-TERMINAL HYDROLASES
Descriptor: PROTEIN (UBIQUITIN YUH1-UBAL)
Authors:Johnston, S.C, Riddle, S.M, Cohen, R.E, Hill, C.P.
Deposit date:1999-05-12
Release date:1999-07-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural basis for the specificity of ubiquitin C-terminal hydrolases.
EMBO J., 18, 1999
1EUV
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BU of 1euv by Molmil
X-RAY STRUCTURE OF THE C-TERMINAL ULP1 PROTEASE DOMAIN IN COMPLEX WITH SMT3, THE YEAST ORTHOLOG OF SUMO.
Descriptor: UBITQUTIN-LIKE PROTEIN SMT3, ULP1 PROTEASE
Authors:Mossessova, E, Lima, C.D.
Deposit date:2000-04-17
Release date:2000-06-07
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast.
Mol.Cell, 5, 2000
1LM8
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BU of 1lm8 by Molmil
Structure of a HIF-1a-pVHL-ElonginB-ElonginC Complex
Descriptor: ELONGIN B, ELONGIN C, Hypoxia-inducible factor 1 alpha, ...
Authors:Min, J.-H, Yang, H, Ivan, M, Gertler, F, Kaelin JR, W.G, Pavletich, N.P.
Deposit date:2002-04-30
Release date:2002-06-12
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of an HIF-1alpha -pVHL complex: hydroxyproline recognition in signaling.
Science, 296, 2002
1LQB
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BU of 1lqb by Molmil
Crystal structure of a hydroxylated HIF-1 alpha peptide bound to the pVHL/elongin-C/elongin-B complex
Descriptor: Elongin B, Elongin C, Hypoxia-inducible factor 1 ALPHA, ...
Authors:Hon, W.C, Wilson, M.I, Harlos, K, Claridge, T.D, Schofield, C.J, Pugh, C.W, Maxwell, P.H, Ratcliffe, P.J, Stuart, D.I, Jones, E.Y.
Deposit date:2002-05-09
Release date:2002-07-03
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for the recognition of hydroxyproline in HIF-1 alpha by pVHL.
Nature, 417, 2002
4PYU
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BU of 4pyu by Molmil
The conserved ubiquitin-like protein hub1 plays a critical role in splicing in human cells
Descriptor: U4/U6.U5 tri-snRNP-associated protein 1, Ubiquitin-like protein 5
Authors:Ammon, T, Mishra, S.K, Kowalska, K, Popowicz, G.M, Holak, T.A, Jentsch, S.
Deposit date:2014-03-28
Release date:2014-07-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:The conserved ubiquitin-like protein Hub1 plays a critical role in splicing in human cells.
J Mol Cell Biol, 6, 2014
4RF1
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BU of 4rf1 by Molmil
Crystal structure of the Middle-East respiratory syndrome coronavirus papain-like protease in complex with ubiquitin (space group P63)
Descriptor: 3-AMINOPROPANE, ORF1ab protein, S-1,2-PROPANEDIOL, ...
Authors:Bailey-Elkin, B.A, Johnson, G.G, Mark, B.L.
Deposit date:2014-09-24
Release date:2014-10-22
Last modified:2015-01-14
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal Structure of the Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Papain-like Protease Bound to Ubiquitin Facilitates Targeted Disruption of Deubiquitinating Activity to Demonstrate Its Role in Innate Immune Suppression.
J.Biol.Chem., 289, 2014

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