PDB: 10863 resultsInfo pagesStatus searchChemie searchBIRD

---

5T1I	CBX3 chromo shadow domain in complex with histone H3 peptide Descriptor: Chromobox protein homolog 3, Histone H3.1, UNKNOWN ATOM OR ION Authors: Liu, Y, Tempel, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) Deposit date: 2016-08-19 Release date: 2016-09-14 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Peptide recognition by heterochromatin protein 1 (HP1) chromoshadow domains revisited: Plasticity in the pseudosymmetric histone binding site of human HP1. J. Biol. Chem., 292, 2017
7OS4	Crystal structure of mouse CARM1 in complex with histone H3_13-31 K18 Descriptor: (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[(~{E})-prop-1-enyl]oxolane-3,4-diol, Histone H3.1, Histone-arginine methyltransferase CARM1 Authors: Marechal, N, Cura, V, Troffer-Charlier, N, Bonnefond, L, Cavarelli, J. Deposit date: 2021-06-07 Release date: 2021-10-27 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.54 Å) Cite: Structural Studies Provide New Insights into the Role of Lysine Acetylation on Substrate Recognition by CARM1 and Inform the Design of Potent Peptidomimetic Inhibitors. Chembiochem, 22, 2021
7OKP	Crystal structure of mouse CARM1 in complex with histone H3_13-22 K18 acetylated Descriptor: (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[(~{E})-prop-1-enyl]oxolane-3,4-diol, Histone H3.3, Histone-arginine methyltransferase CARM1, ... Authors: Marechal, N, Cura, V, Troffer-Charlier, N, Bonnefond, L, Cavarelli, J. Deposit date: 2021-05-18 Release date: 2021-10-27 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural Studies Provide New Insights into the Role of Lysine Acetylation on Substrate Recognition by CARM1 and Inform the Design of Potent Peptidomimetic Inhibitors. Chembiochem, 22, 2021
7K7G	nucleosome and Gal4 complex Descriptor: Centromere DNA-binding protein complex CBF3 subunit B, DNA (147-MER), Histone H2A.1, ... Authors: Ruifang, G, Yawen, B. Deposit date: 2020-09-22 Release date: 2021-03-31 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structural and dynamic mechanisms of CBF3-guided centromeric nucleosome formation. Nat Commun, 12, 2021
2HUE	Structure of the H3-H4 chaperone Asf1 bound to histones H3 and H4 Descriptor: Anti-silencing protein 1, GLYCEROL, Histone H3, ... Authors: English, C.M, Churchill, M.E.A, Tyler, J.K. Deposit date: 2006-07-26 Release date: 2006-11-21 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural basis for the histone chaperone activity of asf1. Cell(Cambridge,Mass.), 127, 2006
2LH0	NMR structure of the histone-interacting N-terminal homodimeric region of Rtt106 Descriptor: Histone chaperone RTT106 Authors: Hu, Q, Cui, G, Mer, G. Deposit date: 2011-08-04 Release date: 2012-02-01 Last modified: 2012-03-07 Method: SOLUTION NMR Cite: Structural basis for recognition of H3K56-acetylated histone H3-H4 by the chaperone Rtt106. Nature, 483, 2012
6YN1	Crystal structure of histone chaperone APLF acidic domain bound to the histone H2A-H2B-H3-H4 octamer Descriptor: Aprataxin and PNK-like factor, CHLORIDE ION, GLYCEROL, ... Authors: Corbeski, I, Guo, X, Van Ingen, H, Sixma, T.K. Deposit date: 2020-04-10 Release date: 2021-11-17 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Chaperoning of the histone octamer by the acidic domain of DNA repair factor APLF. Sci Adv, 8, 2022
7CJ0	Crystal structure of DNAJC9 HBD in complex with H3.3-H4 dimer and MCM2 HBD Descriptor: DNA replication licensing factor MCM2, DnaJ homolog subfamily C member 9, GLYCEROL, ... Authors: Bao, H, Huang, H. Deposit date: 2020-07-09 Release date: 2021-04-14 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network. Mol.Cell, 81, 2021
7CIZ	Crystal structure of DNAJC9 HBD helix2 in complex with H3.3-H4 dimer and MCM2 HBD Descriptor: DNA replication licensing factor MCM2, DnaJ homolog subfamily C member 9, Histone H3.3, ... Authors: Bao, H, Huang, H. Deposit date: 2020-07-08 Release date: 2021-04-14 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network. Mol.Cell, 81, 2021
7Y5V	Cryo-EM structure of the dimeric human CAF1LC-H3-H4 complex Descriptor: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ... Authors: Liu, C.P, Yu, C, Yu, Z.Y, Xu, R.M. Deposit date: 2022-06-17 Release date: 2023-08-16 Last modified: 2023-09-06 Method: ELECTRON MICROSCOPY (6.1 Å) Cite: Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1. Science, 381, 2023
7Y5U	Cryo-EM structure of the monomeric human CAF1LC-H3-H4 complex Descriptor: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ... Authors: Liu, C.P, Yu, Z.Y, Yu, C, Xu, R.M. Deposit date: 2022-06-17 Release date: 2023-08-16 Last modified: 2023-09-06 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1. Science, 381, 2023
8P88	X-ray structure of cardiotoxic light chain H3 in complex to neutralizing nanobody C4 Descriptor: CHLORIDE ION, Light Chain H3, Nanobody C4, ... Authors: Broggini, L, Ricagno, S. Deposit date: 2023-05-31 Release date: 2024-01-31 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.022 Å) Cite: Nanobodies counteract the toxicity of an amyloidogenic light chain by stabilizing a partially open dimeric conformation. J.Mol.Biol., 435, 2023
8P89	X-ray structure of cardiotoxic light chain H3 in complex to neutralizing nanobody B5 Descriptor: CHLORIDE ION, Light chain H3, Nanobody B5 Authors: Broggini, L, Ricagno, S. Deposit date: 2023-05-31 Release date: 2024-01-31 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3.187 Å) Cite: Nanobodies counteract the toxicity of an amyloidogenic light chain by stabilizing a partially open dimeric conformation. J.Mol.Biol., 435, 2023
5KDM	Crystal structure of EBV tegument protein BNRF1 in complex with histone chaperone DAXX and histones H3.3-H4 Descriptor: Death domain-associated protein 6, Histone H3.3, Histone H4, ... Authors: Huang, H, Patel, D. Deposit date: 2016-06-08 Release date: 2016-09-07 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural basis underlying viral hijacking of a histone chaperone complex. Nat Commun, 7, 2016
5Z23	Crystal structure of the nucleosome containing a chimeric histone H3/CENP-A CATD Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... Authors: Arimura, Y, Tachiwana, H, Takagi, H. Deposit date: 2017-12-28 Release date: 2019-02-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.73 Å) Cite: The CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism. Nat Commun, 10, 2019
5ZBX	The crystal structure of the nucleosome containing histone H3.1 CATD(V76Q, K77D) Descriptor: CHLORIDE ION, DNA (146-MER), Histone H2A type 1-B/E, ... Authors: Arimura, Y, Takagi, H, Kurumizaka, H. Deposit date: 2018-02-13 Release date: 2019-02-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.58 Å) Cite: The CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism. Nat Commun, 10, 2019
7KF0	Crystal structure of bH1 Fab variant (CDR H3 loop design 13_0346) in complex with VEGF Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Isoform L-VEGF206 of Vascular endothelial growth factor A, ... Authors: Shi, R, Picard, M.-E. Deposit date: 2020-10-13 Release date: 2021-11-10 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.32 Å) Cite: Crystal structure of bH1 Fab CDR H3 loop variants in apo form and in complex with VEGF to be published
7KF1	Crystal structure of bH1 Fab variant (CDR H3 loop design 14_0130) in complex with VEGF Descriptor: CHLORIDE ION, Isoform L-VEGF206 of Vascular endothelial growth factor A, anti-VEGF-A Fab bH1 heavy chain, ... Authors: Shi, R, Picard, M.-E, Manenda, M.S. Deposit date: 2020-10-13 Release date: 2021-11-10 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Crystal structure of bH1 Fab CDR H3 loop variants in apo form and in complex with VEGF to be published
7KEZ	Crystal structure of bH1 Fab variant (CDR H3 loop design 16_0325) in complex with VEGF Descriptor: CHLORIDE ION, Isoform L-VEGF206 of Vascular endothelial growth factor A, anti-VEGF-A Fab bH1 heavy chain, ... Authors: Shi, R, Manenda, M.S, Picard, M.-E. Deposit date: 2020-10-13 Release date: 2021-11-10 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.31 Å) Cite: Crystal structure of bH1 Fab CDR H3 loop variants in apo form and in complex with VEGF to be published
4QEO	crystal structure of KRYPTONITE in complex with mCHH DNA, H3(1-15) peptide and SAH Descriptor: DNA 5'-ACTGATGAGTACCAT-3', DNA 5'-GGTACT(5CM)ATCAGTAT-3', Histone H3, ... Authors: Du, J, Li, S, Patel, D.J. Deposit date: 2014-05-17 Release date: 2014-07-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE. Mol.Cell, 55, 2014
2F6J	Crystal structure of PHD finger-linker-bromodomain fragment of human BPTF in the H3(1-15)K4me3 bound state Descriptor: ZINC ION, bromodomain PHD finger transcription factor, histone H3, ... Authors: Li, H, Patel, D.J. Deposit date: 2005-11-29 Release date: 2006-07-11 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006
2FSA	Crystal structure of PHD finger-linker-bromodomain fragment of human BPTF in the H3(1-15)K4ME2 bound state Descriptor: Histone H3(1-15)K4me2 peptide, ZINC ION, bromodomain PHD finger transcription factor Authors: Li, H, Patel, D.J. Deposit date: 2006-01-21 Release date: 2006-07-11 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006
6WW3	Crystal structure of HERC2 ZZ domain in complex with SUMO1 tail Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, SUMO1 linked HERC2 ZZ domain (Small ubiquitin-related modifier 1,E3 ubiquitin-protein ligase HERC2), ... Authors: Liu, J, Vann, K.R, Kutateladze, T.G. Deposit date: 2020-05-07 Release date: 2020-08-05 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.096 Å) Cite: Structural Insight into Binding of the ZZ Domain of HERC2 to Histone H3 and SUMO1. Structure, 28, 2020
7D86	Crystal Structure of zebrafishPHF14-PZP Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, PHD finger protein 14, ... Authors: Li, H, Zheng, S. Deposit date: 2020-10-07 Release date: 2021-07-28 Last modified: 2022-02-09 Method: X-RAY DIFFRACTION (1.84 Å) Cite: Molecular basis for bipartite recognition of histone H3 by the PZP domain of PHF14. Nucleic Acids Res., 49, 2021
3A1B	Crystal structure of the DNMT3A ADD domain in complex with histone H3 Descriptor: 1,2-ETHANEDIOL, DNA (cytosine-5)-methyltransferase 3A, Histone H3.1, ... Authors: Otani, J, Arita, K, Ariyoshi, M, Shirakawa, M. Deposit date: 2009-03-28 Release date: 2009-11-10 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.292 Å) Cite: Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain Embo Rep., 10, 2009

<45678910111213141516171819>