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1ZCC
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Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens str.C58
Descriptor: ACETATE ION, SULFATE ION, glycerophosphodiester phosphodiesterase
Authors:Krishnamurthy, N.R, Kumaran, D, Swaminathan, S, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2005-04-11
Release date:2005-05-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens by SAD with a large asymmetric unit.
Proteins, 65, 2006
1O1Z
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BU of 1o1z by Molmil
Crystal structure of glycerophosphodiester phosphodiesterase (GDPD) (TM1621) from Thermotoga maritima at 1.60 A resolution
Descriptor: SODIUM ION, glycerophosphodiester phosphodiesterase
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2003-02-12
Release date:2003-04-01
Last modified:2023-01-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a glycerophosphodiester phosphodiesterase (GDPD) from Thermotoga maritima (TM1621) at 1.60 A resolution.
Proteins, 56, 2004
4R7O
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Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterasefrom Bacillus anthraci
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Kim, Y, Zhou, M, Shatsman, S, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2014-08-28
Release date:2014-09-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.534 Å)
Cite:Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterasefrom Bacillus anthraci
To be Published
8CWP
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BU of 8cwp by Molmil
X-ray crystal structure of NTHi Protein D bound to a putative glycerol moiety
Descriptor: GLYCEROL, Glycerophosphoryl diester phosphodiesterase, SODIUM ION
Authors:Jones, S.P, Cook, K.H, Holmquist, M.L, Almekinder, L, DeLaney, A, Labbe, N, Perdue, J, Jackson, N, Charles, R, Pichichero, M, Kaur, R, Michel, L, Gleghorn, M.L.
Deposit date:2022-05-19
Release date:2022-09-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Vaccine target and carrier molecule nontypeable Haemophilus influenzae protein D dimerizes like the close Escherichia coli GlpQ homolog but unlike other known homolog dimers.
Proteins, 91, 2023
4OEC
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Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1
Descriptor: Glycerophosphoryl diester phosphodiesterase, MAGNESIUM ION
Authors:Atsuta, Y, You, D.J, Takano, K, Koga, Y, Kanaya, S.
Deposit date:2014-01-13
Release date:2015-01-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1
To be Published
3MZ2
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Crystal structure of a Glycerophosphoryl diester phosphodiesterase (BDI_3922) from Parabacteroides distasonis ATCC 8503 at 1.55 A resolution
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, Glycerophosphoryl diester phosphodiesterase, SODIUM ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2010-05-11
Release date:2010-07-07
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of a Glycerophosphoryl diester phosphodiesterase (BDI_3922) from Parabacteroides distasonis ATCC 8503 at 1.55 A resolution
To be published
3NO3
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Crystal structure of a glycerophosphodiester phosphodiesterase (BDI_0402) from Parabacteroides distasonis ATCC 8503 at 1.89 A resolution
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, MAGNESIUM ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2010-06-24
Release date:2010-07-28
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of a glycerophosphodiester phosphodiesterase (BDI_0402) from Parabacteroides distasonis ATCC 8503 at 1.89 A resolution
To be published
8GHI
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Crystal structure of Staphylococcus aureus Lysophosphatidylglycerol phospholipase D
Descriptor: DIHYDROGENPHOSPHATE ION, GLYCEROL, Glycerophosphodiester phosphodiesterase
Authors:Rock, C.O, Yun, M.
Deposit date:2023-03-10
Release date:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Lysophosphatidylglycerol (LPG) phospholipase D maintains membrane homeostasis in Staphylococcus aureus by converting LPG to lysophosphatidic acid.
J.Biol.Chem., 299, 2023
8GHH
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BU of 8ghh by Molmil
Crystal structure of Staphylococcus aureus Lysophosphatidylglycerol phospholipase D
Descriptor: CHLORIDE ION, DIHYDROGENPHOSPHATE ION, GLYCEROL, ...
Authors:Rock, C.O, Yun, M.
Deposit date:2023-03-10
Release date:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Lysophosphatidylglycerol (LPG) phospholipase D maintains membrane homeostasis in Staphylococcus aureus by converting LPG to lysophosphatidic acid.
J.Biol.Chem., 299, 2023
7E0V
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BU of 7e0v by Molmil
GDPD from Pyrococcus furiosus DSM 3638
Descriptor: Glycerophosphodiester phosphodiesterase
Authors:Wang, Y.H, Wang, J, Wang, F.H.
Deposit date:2021-01-28
Release date:2022-02-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of Bomgl, a monoacylglycerol lipase from marine Bacillus
To Be Published
7E2A
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BU of 7e2a by Molmil
GDPD mutant from Pyrococcus furiosus DSM 3638
Descriptor: Glycerophosphodiester phosphodiesterase
Authors:Wang, Y.H, Wang, J, Wang, F.H.
Deposit date:2021-02-05
Release date:2022-02-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal structure of glycerophoshphodiester phospodiesterase D60A mutant from Pyrococcus furiosus DSM
To Be Published
7E2B
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GDPD mutant complex from Pyrococcus furiosus DSM 3638
Descriptor: CHOLINE ION, Glycerophosphodiester phosphodiesterase, MAGNESIUM ION, ...
Authors:Wang, Y.H, Wang, J, Wang, F.H.
Deposit date:2021-02-05
Release date:2022-02-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Observation of the GPC production during hydrolysis of LPC by GDPD D60A from Pyrococcus furiosus DSM 3638
To Be Published
1T8Q
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BU of 1t8q by Molmil
Structural genomics, Crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli
Descriptor: GLYCEROL, Glycerophosphoryl diester phosphodiesterase, periplasmic, ...
Authors:Zhang, R, Kim, Y, Dementieva, I, Duke, N, Stols, L, Donnelly, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-05-13
Release date:2004-08-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli
To be Published
5T9C
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Crystal structure of B. subtilis 168 GlpQ in complex with glycerol-3-phosphate (1 hour soak)
Descriptor: CALCIUM ION, Glycerophosphoryl diester phosphodiesterase, PHOSPHATE ION, ...
Authors:Li, F.K.K, Strynadka, N.C.J.
Deposit date:2016-09-09
Release date:2016-11-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Identification of Two Phosphate Starvation-induced Wall Teichoic Acid Hydrolases Provides First Insights into the Degradative Pathway of a Key Bacterial Cell Wall Component.
J. Biol. Chem., 291, 2016
5T9B
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BU of 5t9b by Molmil
Crystal structure of B. subtilis 168 GlpQ in complex with glycerol-3-phosphate (5 minute soak)
Descriptor: CALCIUM ION, Glycerophosphoryl diester phosphodiesterase, SN-GLYCEROL-3-PHOSPHATE, ...
Authors:Li, F.K.K, Strynadka, N.C.J.
Deposit date:2016-09-09
Release date:2016-11-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Identification of Two Phosphate Starvation-induced Wall Teichoic Acid Hydrolases Provides First Insights into the Degradative Pathway of a Key Bacterial Cell Wall Component.
J. Biol. Chem., 291, 2016
5T91
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Crystal structure of B. subtilis 168 GlpQ in complex with bicine
Descriptor: BICINE, CALCIUM ION, Glycerophosphoryl diester phosphodiesterase, ...
Authors:Li, F.K.K, Strynadka, N.C.J.
Deposit date:2016-09-09
Release date:2016-11-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Identification of Two Phosphate Starvation-induced Wall Teichoic Acid Hydrolases Provides First Insights into the Degradative Pathway of a Key Bacterial Cell Wall Component.
J. Biol. Chem., 291, 2016
1V8E
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Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase from Thermus thermophilus HB8
Descriptor: putative glycerophosphoryl diester phosphodiesterase
Authors:Ishijima, J, Ida, K, Yutani, K, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-05
Release date:2005-01-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of glycerophosphoryl diester phosphodiesterase from Thermus thermophilus HB8
To be Published
2OOG
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BU of 2oog by Molmil
Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus
Descriptor: GLYCEROL, Glycerophosphoryl diester phosphodiesterase, SULFATE ION, ...
Authors:Patskovsky, Y, Fedorov, E, Toro, R, Sauder, J.M, Smith, D, Freeman, J, Maletic, M, Powell, A, Gheyi, T, Wasserman, S.R, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-01-25
Release date:2007-02-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase from Staphylococcus Aureus
To be Published
1VD6
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BU of 1vd6 by Molmil
Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol
Descriptor: GLYCEROL, Glycerophosphoryl Diester Phosphodiesterase
Authors:Ishijima, J, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-18
Release date:2005-04-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol
To be Published
2OTD
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BU of 2otd by Molmil
The crystal structure of the glycerophosphodiester phosphodiesterase from Shigella flexneri 2a
Descriptor: Glycerophosphodiester phosphodiesterase, PHOSPHATE ION
Authors:Zhang, R, Wu, R, Clancy, S, Jiang, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-02-07
Release date:2007-03-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The crystal structure of the glycerophosphodiester phosphodiesterase from Shigella flexneri 2a
To be Published
2P76
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BU of 2p76 by Molmil
Crystal structure of a Glycerophosphodiester Phosphodiesterase from Staphylococcus aureus
Descriptor: GLYCEROL, Glycerophosphoryl diester phosphodiesterase, SODIUM ION
Authors:Fedorov, A.A, Fedorov, E.V, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-03-20
Release date:2007-04-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of a Glycerophosphodiester Phosphodiesterase from Staphylococcus aureus
To be Published
5VUG
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Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase Domain of Uncharacterized Protein Rv2277c from Mycobacterium tuberculosis
Descriptor: CALCIUM ION, GLYCEROL, Uncharacterized protein Rv2277c
Authors:Kim, Y, Li, H, Endres, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2017-05-19
Release date:2017-06-14
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase Domain of Uncharacterized Protein Rv2277c from Mycobacterium tuberculosis
To Be Published
2PZ0
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Crystal structure of Glycerophosphodiester Phosphodiesterase (GDPD) from T. tengcongensis
Descriptor: CALCIUM ION, GLYCEROL, Glycerophosphoryl diester phosphodiesterase
Authors:Shi, L, Liu, J.F, An, X.M, Liang, D.C.
Deposit date:2007-05-17
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Crystal structure of glycerophosphodiester phosphodiesterase (GDPD) from Thermoanaerobacter tengcongensis, a metal ion-dependent enzyme: insight into the catalytic mechanism.
Proteins, 72, 2008
3KS6
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Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (17743486) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 1.80 A resolution
Descriptor: ACETATE ION, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-11-20
Release date:2009-12-08
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (17743486) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 1.80 A resolution
To be published
3L12
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Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (YP_165505.1) from Silicibacter pomeroyi DSS-3 at 1.60 A resolution
Descriptor: CHLORIDE ION, MAGNESIUM ION, Putative Glycerophosphoryl diester phosphodiesterase, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-12-10
Release date:2009-12-29
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (YP_165505.1) from Silicibacter pomeroyi DSS-3 at 1.60 A resolution
To be published

 

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數據於2024-03-27公開中

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