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4O8J
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BU of 4o8j by Molmil
Crystal structure of RtcA, the RNA 3'-terminal phosphate cyclase from Pyrococcus horikoshii, in complex with rACAAA3'phosphate and adenine.
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE, RNA, ...
Authors:Desai, K.K, Bingman, C.A, Phillips Jr, G.N, Raines, R.T.
Deposit date:2013-12-27
Release date:2014-09-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structure of RNA 3'-phosphate cyclase bound to substrate RNA.
Rna, 20, 2014
5NEW
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BU of 5new by Molmil
RNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimer
Descriptor: RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*U)-3'), RNA-binding protein Hfq, ...
Authors:Schulz, E.C, Barabas, O.
Deposit date:2017-03-12
Release date:2017-10-04
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (2.511 Å)
Cite:Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq.
Sci Rep, 7, 2017
3MJB
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BU of 3mjb by Molmil
Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to sulfate
Descriptor: Domain 3 of the cricket paralysis virus intergenic region IRES RNA, RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3'), SULFATE ION
Authors:Kieft, J.S, Golden, B.L, Costantino, D.A, Chase, E.
Deposit date:2010-04-12
Release date:2010-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Identification and characterization of anion binding sites in RNA.
Rna, 16, 2010
3MJ3
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BU of 3mj3 by Molmil
Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to selenate
Descriptor: Domain 3 of the cricket paralysis virus intergenic region IRES RNA, RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3'), SELENATE ION
Authors:Kieft, J.S, Chase, E, Costantino, D.A, Golden, B.L.
Deposit date:2010-04-12
Release date:2010-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Identification and characterization of anion binding sites in RNA.
Rna, 16, 2010
3MJA
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BU of 3mja by Molmil
Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to selenate, structure #2
Descriptor: Domain 3 of the cricket paralysis virus intergenic region IRES RNA, RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3'), SELENATE ION
Authors:Kieft, J.S, Golden, B.L, Costantino, D.A, Chase, E.
Deposit date:2010-04-12
Release date:2010-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Identification and characterization of anion binding sites in RNA.
Rna, 16, 2010
3EGN
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BU of 3egn by Molmil
C-terminal RNA Recognition Motif of the U11/U12 65K Protein
Descriptor: RNA-binding protein 40
Authors:Netter, C, Wahl, M.C.
Deposit date:2008-09-11
Release date:2009-06-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Functional stabilization of an RNA recognition motif by a noncanonical N-terminal expansion
Rna, 15, 2009
5NBB
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BU of 5nbb by Molmil
Structure of the C-terminal domain of the Escherichia Coli ProQ RNA binding protein
Descriptor: RNA chaperone ProQ
Authors:Gonzales, G, Hardwick, S, Maslen, S, Skehel, M, Holmqvist, E, Vogel, J, Bateman, A, Luisi, B, Broadhurst, R.
Deposit date:2017-03-01
Release date:2017-05-03
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of the Escherichia coli ProQ RNA-binding protein.
RNA, 23, 2017
5NXT
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BU of 5nxt by Molmil
Wobble base paired RNA double helix
Descriptor: RNA (5'-R(*UP*GP*UP*UP*CP*UP*CP*UP*AP*CP*GP*AP*AP*GP*AP*AP*CP*A)-3')
Authors:Garg, A, Heinemann, U.
Deposit date:2017-05-10
Release date:2017-11-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.379 Å)
Cite:A novel form of RNA double helix based on G·U and C·A+ wobble base pairing.
RNA, 24, 2018
5NB9
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BU of 5nb9 by Molmil
Structure of the N-terminal domain of the Escherichia Coli ProQ RNA binding protein
Descriptor: RNA chaperone ProQ
Authors:Gonzales, G, Hardwick, S, Maslen, S, Skehel, M, Holmqvist, E, Vogel, J, Bateman, A, Luisi, B, Broadhurst, R.
Deposit date:2017-03-01
Release date:2017-05-03
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of the Escherichia coli ProQ RNA-binding protein.
RNA, 23, 2017
7UME
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BU of 7ume by Molmil
DENV1 SLA top stemloop RNA (DenvTSL)
Descriptor: RNA (28-MER)
Authors:Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2022-04-06
Release date:2022-07-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of the dengue virus RNA promoter.
Rna, 28, 2022
7UMD
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BU of 7umd by Molmil
DENV1 SLA three-way junction RNA (DenvSLAsh)
Descriptor: RNA (40-MER)
Authors:Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2022-04-06
Release date:2022-07-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of the dengue virus RNA promoter.
Rna, 28, 2022
7UMC
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BU of 7umc by Molmil
DENV1 SLA RNA (DenvSLATL)
Descriptor: RNA (70-MER)
Authors:Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2022-04-06
Release date:2022-07-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of the dengue virus RNA promoter.
Rna, 28, 2022
7EXY
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BU of 7exy by Molmil
T-hairpin structure found in the RNA element involved in the piRNA biogenesis
Descriptor: RNA (5'-R(*UP*UP*GP*GP*UP*UP*UP*GP*AP*UP*UP*CP*CP*AP*AP*G)-3')
Authors:Takase, N, Kawai, G.
Deposit date:2021-05-29
Release date:2022-03-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:T-hairpin structure found in the RNA element involved in piRNA biogenesis.
Rna, 28, 2022
4O89
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BU of 4o89 by Molmil
Crystal structure of RtcA, the RNA 3'-terminal phosphate cyclase from Pyrococcus horikoshii.
Descriptor: CITRIC ACID, RNA 3'-terminal phosphate cyclase
Authors:Desai, K.K, Bingman, C.A, Phillips Jr, G.N, Raines, R.T.
Deposit date:2013-12-26
Release date:2014-09-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of RNA 3'-phosphate cyclase bound to substrate RNA.
Rna, 20, 2014
1Z43
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BU of 1z43 by Molmil
Crystal structure of 7S.S SRP RNA of M. jannaschii
Descriptor: RNA (101-MER)
Authors:Hainzl, T, Huang, S, Sauer-Eriksson, A.E.
Deposit date:2005-03-15
Release date:2005-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural insights into SRP RNA: An induced fit mechanism for SRP assembly
Rna, 11, 2005
6GE1
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BU of 6ge1 by Molmil
Solution structure of the r(UGGUGGU)4 RNA quadruplex
Descriptor: RNA (5'-R(*UP*GP*GP*UP*GP*GP*U)-3')
Authors:Andralojc, W, Gdaniec, Z.
Deposit date:2018-04-25
Release date:2018-10-31
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Unraveling the structural basis for the exceptional stability of RNA G-quadruplexes capped by a uridine tetrad at the 3' terminus.
RNA, 25, 2019
3CJZ
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BU of 3cjz by Molmil
Effects of N2,N2-dimethylguanosine on RNA structure and stability: crystal structure of an RNA duplex with tandem m22G:A pairs
Descriptor: RNA (5'-R(*GP*GP*AP*CP*GP*(M2G)P*AP*CP*GP*UP*CP*CP*U)-3')
Authors:Pallan, P.S, Kreutz, C, Bosio, S, Micura, R, Egli, M.
Deposit date:2008-03-14
Release date:2008-10-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Effects of N2,N2-dimethylguanosine on RNA structure and stability: crystal structure of an RNA duplex with tandem m2 2G:A pairs.
Rna, 14, 2008
2L8F
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BU of 2l8f by Molmil
Structure of a 4X4 Nucleotide RNA Internal Loop from an R2 Retrotransposon
Descriptor: RNA (5'-R(*CP*GP*GP*AP*GP*GP*AP*CP*AP*CP*U)-3'), RNA (5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3')
Authors:Lerman, Y, Kennedy, S.D, Turner, D.H.
Deposit date:2011-01-11
Release date:2011-08-31
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions.
Rna, 17, 2011
3D0M
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BU of 3d0m by Molmil
X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex
Descriptor: RNA (5'-R(*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3'), SULFATE ION
Authors:Rypniewski, W, Adamiak, D.A, Milecki, J, Adamiak, R.W.
Deposit date:2008-05-02
Release date:2008-09-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Noncanonical G(syn)-G(anti) base pairs stabilized by sulphate anions in two X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex.
Rna, 14, 2008
3CZW
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BU of 3czw by Molmil
X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex
Descriptor: RNA (5'-R(*G*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3'), SULFATE ION
Authors:Rypniewski, W, Adamiak, D.A, Milecki, J, Adamiak, R.W.
Deposit date:2008-04-30
Release date:2008-09-09
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Noncanonical G(syn)-G(anti) base pairs stabilized by sulphate anions in two X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex.
Rna, 14, 2008
4WAL
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BU of 4wal by Molmil
Crystal structure of selenomethionine Msl5 protein in complex with RNA at 2.2 A
Descriptor: Branchpoint-bridging protein, CHLORIDE ION, GLYCEROL, ...
Authors:Jacewicz, A, Smith, P, Chico, L, Schwer, B, Shuman, S.
Deposit date:2014-08-29
Release date:2014-12-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs.
Rna, 21, 2015
4WAN
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BU of 4wan by Molmil
Crystal structure of Msl5 protein in complex with RNA at 1.8 A
Descriptor: ACETATE ION, Branchpoint-bridging protein, GLYCEROL, ...
Authors:Jacewicz, A, Smith, P, Chico, L, Schwer, B, Shuman, S.
Deposit date:2014-08-29
Release date:2014-12-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs.
Rna, 21, 2015
5I8Q
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BU of 5i8q by Molmil
S. cerevisiae Prp43 in complex with RNA and ADPNP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43, ...
Authors:He, Y, Nielsen, K.H, Andersen, G.R.
Deposit date:2016-02-19
Release date:2017-02-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Structure of the DEAH/RHA ATPase Prp43p bound to RNA implicates a pair of hairpins and motif Va in translocation along RNA.
RNA, 23, 2017
6O16
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BU of 6o16 by Molmil
Crystal structure of murine DHX37 in complex with RNA
Descriptor: DEAH (Asp-Glu-Ala-His) box polypeptide 37, RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')
Authors:Boneberg, F, Brandmann, T, Kobel, L, van den Heuvel, J, Bargsten, K, Bammert, L, Kutay, U, Jinek, M.
Deposit date:2019-02-18
Release date:2019-04-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.875 Å)
Cite:Molecular mechanism of the RNA helicase DHX37 and its activation by UTP14A in ribosome biogenesis.
Rna, 25, 2019
7PMQ
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BU of 7pmq by Molmil
DEAD-box helicase DbpA in the active conformation bound to a hairpin loop RNA and ADP/BeF3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DbpA, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Wurm, J.P.
Deposit date:2021-09-02
Release date:2022-09-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:Structural basis for RNA-duplex unwinding by the DEAD-box helicase DbpA.
Rna, 29, 2023

218853

数据于2024-04-24公开中

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