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3ASL
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BU of 3asl by Molmil
Structure of UHRF1 in complex with histone tail
Descriptor: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase UHRF1, Histone H3.3, ...
Authors:Arita, K, Sugita, K, Unoki, M, Hamamoto, R, Sekiyama, N, Tochio, H, Ariyoshi, M, Shirakawa, M.
Deposit date:2010-12-16
Release date:2012-01-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1
Proc.Natl.Acad.Sci.USA, 109, 2012
1F62
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BU of 1f62 by Molmil
WSTF-PHD
Descriptor: TRANSCRIPTION FACTOR WSTF, ZINC ION
Authors:Pascual, J, Martinez-Yamout, M, Dyson, H.J, Wright, P.E.
Deposit date:2000-06-19
Release date:2000-12-27
Last modified:2019-11-06
Method:SOLUTION NMR
Cite:Structure of the PHD zinc finger from human Williams-Beuren syndrome transcription factor.
J.Mol.Biol., 304, 2000
1FP0
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BU of 1fp0 by Molmil
SOLUTION STRUCTURE OF THE PHD DOMAIN FROM THE KAP-1 COREPRESSOR
Descriptor: KAP-1 COREPRESSOR, ZINC ION
Authors:Capili, A.D, Schultz, D.C, Rauscher III, F.J, Borden, K.L.B.
Deposit date:2000-08-29
Release date:2001-01-24
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of the PHD domain from the KAP-1 corepressor: structural determinants for PHD, RING and LIM zinc-binding domains.
EMBO J., 20, 2001
1MM3
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BU of 1mm3 by Molmil
Solution structure of the 2nd PHD domain from Mi2b with C-terminal loop replaced by corresponding loop from WSTF
Descriptor: Mi2-beta(Chromodomain helicase-DNA-binding protein 4) and transcription factor WSTF, ZINC ION
Authors:Kwan, A.H.Y, Gell, D.A, Verger, A, Crossley, M, Matthews, J.M, Mackay, J.P.
Deposit date:2002-09-02
Release date:2003-07-22
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Engineering a Protein Scaffold from a PHD Finger
structure, 11, 2003
1MM2
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BU of 1mm2 by Molmil
Solution structure of the 2nd PHD domain from Mi2b
Descriptor: Mi2-beta, ZINC ION
Authors:Kwan, A.H.Y, Gell, D.A, Verger, A, Crossley, M, Matthews, J.M, Mackay, J.P.
Deposit date:2002-09-02
Release date:2003-07-22
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Engineering a Protein Scaffold from a PHD Finger
structure, 11, 2003
7KLO
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BU of 7klo by Molmil
Solution structure of the PHD1 domain of histone demethylase KDM5A
Descriptor: Lysine-specific demethylase 5A, ZINC ION
Authors:Longbotham, E.J, Kelly, M.J.S, Fujimori, D.G.
Deposit date:2020-10-30
Release date:2021-03-03
Method:SOLUTION NMR
Cite:Recognition of Histone H3 Methylation States by the PHD1 Domain of Histone Demethylase KDM5A.
Acs Chem.Biol., 2021
7KLR
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BU of 7klr by Molmil
Solution structure of the PHD1 domain of histone demethylase KDM5A in complex with a histone H3(1-10) peptide
Descriptor: Histone H3.1, Lysine-specific demethylase 5A, ZINC ION
Authors:Longbotham, E.J, Kelly, M.J.S, Fujimori, D.G.
Deposit date:2020-10-31
Release date:2021-03-03
Method:SOLUTION NMR
Cite:Recognition of Histone H3 Methylation States by the PHD1 Domain of Histone Demethylase KDM5A.
Acs Chem.Biol., 2021
3ZVZ
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BU of 3zvz by Molmil
PHD finger of human UHRF1
Descriptor: E3 UBIQUITIN-PROTEIN LIGASE UHRF1, ZINC ION
Authors:Lallous, N, Birck, C, Mc Ewen, A.G, Legrand, P, Samama, J.P.
Deposit date:2011-07-28
Release date:2011-11-30
Method:X-RAY DIFFRACTION (1.449 Å)
Cite:The Phd Finger of Human Uhrf1 Reveals a New Subgroup of Unmethylated Histone H3 Tail Readers.
Plos One, 6, 2011
7M10
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BU of 7m10 by Molmil
PHF2 PHD Domain Complexed with Peptide From N-terminus of VRK1
Descriptor: FORMIC ACID, Lysine-specific demethylase PHF2, Serine/threonine-protein kinase VRK1 N-terminus peptide, ...
Authors:Horton, J.R, Cheng, X.
Deposit date:2021-03-11
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Histone H3 N-terminal mimicry drives a novel network of methyl-effector interactions.
Biochem.J., 478, 2021
2DX8
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BU of 2dx8 by Molmil
Crystal Structure Analysis of the PHD domain of the Transcription Coactivator Pygophus
Descriptor: Pygopus homolog 1, ZINC ION
Authors:Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-24
Release date:2007-05-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure Analysis of the PHD Domain of the Transcription Coactivator Pygopus
To be Published
2E6S
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BU of 2e6s by Molmil
Solution structure of the PHD domain in RING finger protein 107
Descriptor: E3 ubiquitin-protein ligase UHRF2, ZINC ION
Authors:Kadirvel, S, He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-12-28
Release date:2007-07-03
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of the PHD domain in RING finger protein 107
To be Published
2E6R
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BU of 2e6r by Molmil
Solution structure of the PHD domain in SmcY protein
Descriptor: Jumonji/ARID domain-containing protein 1D, ZINC ION
Authors:Kadirvel, S, He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-12-28
Release date:2007-07-03
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of the PHD domain in SmcY protein
To be Published
6VFO
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BU of 6vfo by Molmil
Solution structure of the PHD of mouse UHRF1 (NP95)
Descriptor: E3 ubiquitin-protein ligase UHRF1, ZINC ION
Authors:Lemak, A, Houliston, S, Duan, S, Arrowsmith, C.H.
Deposit date:2020-01-06
Release date:2020-06-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Alternative splicing and allosteric regulation modulate the chromatin binding of UHRF1.
Nucleic Acids Res., 48, 2020
4QF3
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BU of 4qf3 by Molmil
Crystal structure of human BAZ2B PHD zinc finger in the free form
Descriptor: Bromodomain adjacent to zinc finger domain protein 2B, ZINC ION
Authors:Tallant, C, Van Molle, I, Chirgadze, D.Y, Ciulli, A.
Deposit date:2014-05-19
Release date:2014-07-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular basis of histone tail recognition by human TIP5 PHD finger and bromodomain of the chromatin remodeling complex NoRC.
Structure, 23, 2015
4QF2
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BU of 4qf2 by Molmil
Crystal structure of human BAZ2A PHD zinc finger in the free form
Descriptor: Bromodomain adjacent to zinc finger domain protein 2A, GLYCEROL, PHOSPHATE ION, ...
Authors:Tallant, C, Overvoorde, L, Van Molle, I, Chirgadze, D.Y, Ciulli, A.
Deposit date:2014-05-19
Release date:2014-07-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular basis of histone tail recognition by human TIP5 PHD finger and bromodomain of the chromatin remodeling complex NoRC.
Structure, 23, 2015
4UP0
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BU of 4up0 by Molmil
Ternary crystal structure of the Pygo2 PHD finger in complex with the B9L HD1 domain and a H3K4me2 peptide
Descriptor: HISTONE H3.1, PYGOPUS HOMOLOG 2, B-CELL CLL/LYMPHOMA 9-LIKE PROTEIN, ...
Authors:Miller, T.C.R, Fiedler, M, Rutherford, T.J, Birchall, K, Chugh, J, Bienz, M.
Deposit date:2014-06-11
Release date:2014-11-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Competitive Binding of a Benzimidazole to the Histone-Binding Pocket of the Pygo Phd Finger.
Acs Chem.Biol., 9, 2014
4UP5
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BU of 4up5 by Molmil
Crystal structure of the Pygo2 PHD finger in complex with the B9L HD1 domain and a chemical fragment
Descriptor: 6-methoxy-1,3-benzothiazol-2-amine, PYGOPUS HOMOLOG 2, B-CELL CLL/LYMPHOMA 9-LIKE PROTEIN, ...
Authors:Miller, T.C.R, Fiedler, M, Rutherford, T.J, Birchall, K, Chugh, J, Bienz, M.
Deposit date:2014-06-12
Release date:2014-11-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Competitive Binding of a Benzimidazole to the Histone-Binding Pocket of the Pygo Phd Finger.
Acs Chem.Biol., 9, 2014
4L7X
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BU of 4l7x by Molmil
Crystal structure of the DIDO PHD finger in complex with H3K4me3
Descriptor: Death-inducer obliterator 1, Histone H3 peptide, ZINC ION
Authors:Tong, Q, Gatchalian, J, Kutateladze, T.G.
Deposit date:2013-06-14
Release date:2013-07-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Dido3 PHD Modulates Cell Differentiation and Division.
Cell Rep, 4, 2013
4LLB
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BU of 4llb by Molmil
Crystal Structure of MOZ double PHD finger histone H3K14ac complex
Descriptor: Histone H3.1, Histone acetyltransferase KAT6A, ZINC ION
Authors:Dreveny, I, Deeves, S.E, Yue, B, Heery, D.M.
Deposit date:2013-07-09
Release date:2013-10-16
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The double PHD finger domain of MOZ/MYST3 induces alpha-helical structure of the histone H3 tail to facilitate acetylation and methylation sampling and modification.
Nucleic Acids Res., 42, 2014
4LKA
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BU of 4lka by Molmil
Crystal Structure of MOZ double PHD finger histone H3K9ac complex
Descriptor: Histone H3.1, Histone acetyltransferase KAT6A, ZINC ION
Authors:Dreveny, I, Deeves, S.E, Yue, B, Heery, D.M.
Deposit date:2013-07-07
Release date:2013-10-16
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:The double PHD finger domain of MOZ/MYST3 induces alpha-helical structure of the histone H3 tail to facilitate acetylation and methylation sampling and modification.
Nucleic Acids Res., 42, 2014
4LJN
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BU of 4ljn by Molmil
Crystal Structure of MOZ double PHD finger
Descriptor: Histone acetyltransferase KAT6A, ZINC ION
Authors:Dreveny, I, Deeves, S.E, Yue, B, Heery, D.M.
Deposit date:2013-07-05
Release date:2013-10-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:The double PHD finger domain of MOZ/MYST3 induces alpha-helical structure of the histone H3 tail to facilitate acetylation and methylation sampling and modification.
Nucleic Acids Res., 42, 2014
4LK9
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BU of 4lk9 by Molmil
Crystal Structure of MOZ double PHD finger histone H3 tail complex
Descriptor: Histone H3.1, Histone acetyltransferase KAT6A, ZINC ION
Authors:Dreveny, I, Deeves, S.E, Yue, B, Heery, D.M.
Deposit date:2013-07-07
Release date:2013-10-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The double PHD finger domain of MOZ/MYST3 induces alpha-helical structure of the histone H3 tail to facilitate acetylation and methylation sampling and modification.
Nucleic Acids Res., 42, 2014
5I3L
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BU of 5i3l by Molmil
DPF3b in complex with H3K14ac peptide
Descriptor: 1,2-ETHANEDIOL, H3K14ac peptide, SODIUM ION, ...
Authors:Tempel, W, Liu, Y, Walker, J.R, Zhao, A, Qin, S, Loppnau, P, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2016-02-10
Release date:2016-02-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of DPF3b in complex with an acetylated histone peptide.
J.Struct.Biol., 195, 2016
6LSB
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BU of 6lsb by Molmil
Crystal Structure of DPF domain of MOZ in complex with H3K14bz peptide
Descriptor: Histone H3, Histone acetyltransferase KAT6A, ZINC ION
Authors:Li, H.T, Ren, X.L.
Deposit date:2020-01-17
Release date:2020-11-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Histone benzoylation serves as an epigenetic mark for DPF and YEATS family proteins.
Nucleic Acids Res., 49, 2021
6IIW
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BU of 6iiw by Molmil
Crystal structure of human UHRF1 PHD finger in complex with PAF15
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, E3 ubiquitin-protein ligase UHRF1, PCNA-associated factor, ...
Authors:Arita, K, Kori, S.
Deposit date:2018-10-07
Release date:2019-10-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.699 Å)
Cite:Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation.
Nat Commun, 11, 2020

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