PDB: 313 件ウェブページステータス検索Chemie searchBIRD

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1TTY	Solution structure of sigma A region 4 from Thermotoga maritima 分子名称: RNA polymerase sigma factor rpoD 著者 Lambert, L.J, Wei, Y, Schirf, V, Demeler, B, Werner, M.H. 登録日 2004-06-23 公開日 2004-11-23 最終更新日 2022-03-02 実験手法 SOLUTION NMR 主引用文献 T4 AsiA blocks DNA recognition by remodeling sigma(70) region 4 Embo J., 23, 2004
1KU7	Crystal Structure of Thermus aquatics RNA Polymerase SigmaA Subunit Region 4 Bound to-35 Element DNA 分子名称: 5'-D(*CP*CP*TP*TP*GP*AP*CP*AP*AP*AP*G)-3', 5'-D(*CP*CP*TP*TP*TP*GP*TP*CP*AP*AP*G)-3', sigma factor sigA 著者 Campbell, E.A, Muzzin, O, Chlenov, M, Sun, J.L, Olson, C.A, Weinman, O, Trester-Zedlitz, M.L, Darst, S.A. 登録日 2002-01-21 公開日 2002-03-29 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol.Cell, 9, 2002
1KU3	Crystal Structure of Thermus aquaticus RNA Polymerase Sigma Subunit Fragment, Region 4 分子名称: sigma factor sigA 著者 Campbell, E.A, Muzzin, O, Chlenov, M, Sun, J.L, Olson, C.A, Weinman, O, Trester-Zedlitz, M.L, Darst, S.A. 登録日 2002-01-21 公開日 2002-04-03 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol.Cell, 9, 2002
6FI7	E.coli Sigma factor S (RpoS) Region 4 分子名称: RNA polymerase sigma factor RpoS 著者 Liu, B, Matthews, S.J. 登録日 2018-01-17 公開日 2018-06-06 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 T7 phage factor required for managing RpoS inEscherichia coli. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6IDO	Crystal structure of Klebsiella pneumoniae sigma4 of sigmaS fusing with the RNA polymerase beta-flap-tip-helix in complex with -35 element DNA 分子名称: DNA (5'-D(P*CP*CP*AP*CP*TP*TP*GP*AP*CP*AP*AP*AP*TP*CP*G)-3'), DNA (5'-D(P*GP*AP*TP*TP*TP*GP*TP*CP*AP*AP*GP*TP*GP*GP*C)-3'), RNA polymerase sigma factor RpoS,RNA polymerase beta-flap-tip-helix 著者 Lou, Y.C, Chien, C.Y, Chen, C, Hsu, C.H. 登録日 2018-09-10 公開日 2019-09-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.748 Å) 主引用文献 Structural basis for -35 element recognition by sigma4chimera proteins and their interactions with PmrA response regulator. Proteins, 88, 2020
3HUG	Crystal structure of Mycobacterium tuberculosis anti-sigma factor RslA in complex with -35 promoter binding domain of sigL 分子名称: PROBABLE CONSERVED MEMBRANE PROTEIN, RNA polymerase sigma factor, SULFATE ION, ... 著者 Thakur, K.G, Gopal, B. 登録日 2009-06-14 公開日 2010-03-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural and biochemical bases for the redox sensitivity of Mycobacterium tuberculosis RslA J.Mol.Biol., 397, 2010
1TLH	T4 AsiA bound to sigma70 region 4 分子名称: 10 kDa anti-sigma factor, RNA polymerase sigma factor rpoD 著者 Lambert, L.J, Wei, Y, Schirf, V, Demeler, B, Werner, M.H. 登録日 2004-06-09 公開日 2004-11-23 最終更新日 2011-07-13 実験手法 SOLUTION NMR 主引用文献 T4 AsiA blocks DNA recognition by remodeling sigma(70) region 4 Embo J., 23, 2004
1NR3	SOLUTION STRUCTURE OF THE PROTEIN MTH0916: THE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TT212 分子名称: DNA-binding protein tfx 著者 Shen, Y, Liu, G, Bhaskaran, R, Yee, A, Arrowsmith, C, Szyperski, T, Northeast Structural Genomics Consortium (NESG) 登録日 2003-01-23 公開日 2003-06-10 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 SOLUTION STRUCTURE OF THE PROTEIN MTH0916: THE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TT212 To be Published
8HNP	Archaeal transcription factor Mutant 分子名称: Archaeal transcription regulator 著者 Bae, D.W, Cha, S.S. 登録日 2022-12-08 公開日 2023-09-13 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.39 Å) 主引用文献 An archaeal transcription factor EnfR with a novel 'eighth note' fold controls hydrogen production of a hyperthermophilic archaeon Thermococcus onnurineus NA1. Nucleic Acids Res., 51, 2023
8HNO	Archaeal transcription factor Wild type 分子名称: Archaeal transcription regulator 著者 Bae, D.W, Cha, S.S. 登録日 2022-12-08 公開日 2023-09-13 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.84 Å) 主引用文献 An archaeal transcription factor EnfR with a novel 'eighth note' fold controls hydrogen production of a hyperthermophilic archaeon Thermococcus onnurineus NA1. Nucleic Acids Res., 51, 2023
4G8X	G1 ORF67 / Staphyloccus aureus sigmaA domain 4 complex 分子名称: ORF067, RNA polymerase sigma factor rpoD 著者 Darst, S.A, Osmundson, J.S, Montero-Diaz, C.M, Hochschild, A. 登録日 2012-07-23 公開日 2013-08-07 実験手法 X-RAY DIFFRACTION (3.001 Å) 主引用文献 Promoter-specific transcription inhibition in Staphylococcus aureus by a phage protein. Cell(Cambridge,Mass.), 151, 2012
4G6D	G1 ORF67 / Staphyloccus aureus sigmaA domain 4 complex 分子名称: ORF067, RNA polymerase sigma factor rpoD 著者 Darst, S.A, Osmundson, J.S. 登録日 2012-07-18 公開日 2013-01-23 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.9971 Å) 主引用文献 Promoter-specific transcription inhibition in Staphylococcus aureus by a phage protein. Cell(Cambridge,Mass.), 151, 2012
4G94	G1 ORF67 / Staphyloccus aureus sigmaA domain 4 complex 分子名称: ORF067, RNA polymerase sigma factor rpoD 著者 Darst, S.A, Osmundson, J.S, Montero-Diaz, C.M, Hochschild, A. 登録日 2012-07-23 公開日 2013-01-23 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.9971 Å) 主引用文献 Promoter-specific transcription inhibition in Staphylococcus aureus by a phage protein. Cell(Cambridge,Mass.), 151, 2012
4Q4Z	Thermus thermophilus RNA polymerase de novo transcription initiation complex 分子名称: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, ADENOSINE-5'-TRIPHOSPHATE, DNA (25-MER), ... 著者 Murakami, K.S. 登録日 2014-04-15 公開日 2014-07-30 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural basis of transcription initiation by bacterial RNA polymerase holoenzyme. J.Biol.Chem., 289, 2014
8U3B	Cryo-EM structure of E. coli NarL-transcription activation complex at 3.2A 分子名称: DNA (69-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Liu, B, Kompaniiets, D, Wang, D. 登録日 2023-09-07 公開日 2024-01-17 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.23 Å) 主引用文献 Structural basis for transcription activation by the nitrate-responsive regulator NarL. Nucleic Acids Res., 52, 2024
3N97	RNA polymerase alpha C-terminal domain (E. coli) and sigma region 4 (T. aq. mutant) bound to (UP,-35 element) DNA 分子名称: ACETATE ION, DNA (5'-D(*CP*CP*AP*TP*GP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*TP*TP*TP*TP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*AP*AP*AP*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*CP*AP*TP*GP*G)-3'), ... 著者 Lara-Gonzalez, S, Birktoft, J.J, Lawson, C.L. 登録日 2010-05-28 公開日 2011-06-08 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.252 Å) 主引用文献 The RNA Polymerase alpha Subunit Recognizes the DNA Shape of the Upstream Promoter Element. Biochemistry, 59, 2020
6TYF	Crystal structure of MTB sigma L transcription initiation complex with 6 nt long RNA primer 分子名称: DNA (5'-D(*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*AP*TP*CP*GP*AP*GP*GP*GP*T)-3'), DNA (5'-D(P*GP*TP*GP*TP*CP*AP*GP*TP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*C)-3'), DNA-directed RNA polymerase subunit alpha, ... 著者 Molodtsov, V, Ebright, R.H. 登録日 2019-08-08 公開日 2020-03-11 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription. Proc.Natl.Acad.Sci.USA, 117, 2020
2Z2S	Crystal Structure of Rhodobacter sphaeroides SigE in complex with the anti-sigma ChrR 分子名称: Anti-Sigma factor ChrR, transcriptional activator ChrR, RpoE, ... 著者 Darst, S.A, Campbell, E.A. 登録日 2007-05-26 公開日 2008-02-05 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 A conserved structural module regulates transcriptional responses to diverse stress signals in bacteria. Mol.Cell, 27, 2007
3T72	PhoB(E)-Sigma70(4)-(RNAP-Betha-flap-tip-helix)-DNA Transcription Activation Sub-Complex 分子名称: PHO BOX DNA (STRAND 1), PHO BOX DNA (STRAND 2), Phosphate regulon transcriptional regulatory protein phoB, ... 著者 Blanco, A.G, Canals, A, Bernues, J, Sola, M, Coll, M. 登録日 2011-07-29 公開日 2011-09-21 最終更新日 2023-07-26 実験手法 X-RAY DIFFRACTION (4.33 Å) 主引用文献 The structure of a transcription activation subcomplex reveals how sigma (70) is recruited to PhoB promoters. Embo J., 30, 2011
3IYD	Three-dimensional EM structure of an intact activator-dependent transcription initiation complex 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator, DNA (98-MER), ... 著者 Hudson, B.P, Quispe, J, Lara, S, Kim, Y, Berman, H, Arnold, E, Ebright, R.H, Lawson, C.L. 登録日 2009-08-01 公開日 2009-11-10 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (19.799999 Å) 主引用文献 Three-dimensional EM structure of an intact activator-dependent transcription initiation complex Proc.Natl.Acad.Sci.USA, 106, 2009
2P7V	Crystal structure of the Escherichia coli regulator of sigma 70, Rsd, in complex with sigma 70 domain 4 分子名称: MAGNESIUM ION, RNA polymerase sigma factor rpoD, Regulator of sigma D 著者 Patikoglou, G.A, Westblade, L.F, Campbell, E.A, Lamour, V, Lane, W.J, Darst, S.A. 登録日 2007-03-20 公開日 2007-08-21 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of the Escherichia coli regulator of sigma70, Rsd, in complex with sigma70 domain 4. J.Mol.Biol., 372, 2007
3DXJ	Crystal structure of thermus thermophilus rna polymerase holoenzyme in complex with the antibiotic myxopyronin 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, BACTERIAL RNA POLYMERASE BETA SUBUNIT; CHAIN C, M, ... 著者 Das, K, Arnold, E. 登録日 2008-07-24 公開日 2008-10-14 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The RNA polymerase "switch region" is a target for inhibitors. Cell(Cambridge,Mass.), 135, 2008
2Q1Z	Crystal Structure of Rhodobacter sphaeroides SigE in complex with the anti-sigma ChrR 分子名称: Anti-Sigma factor ChrR, transcriptional activator ChrR, RpoE, ... 著者 Campbell, E.A, Darst, S.A. 登録日 2007-05-25 公開日 2007-09-18 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 A conserved structural module regulates transcriptional responses to diverse stress signals in bacteria. Mol.Cell, 27, 2007
3EQL	Crystal structure of the T. Thermophilus RNA polymerase holoenzyme in complex with antibiotic myxopyronin 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Vassylyev, D.G, Vassylyeva, M.N, Artsimovitch, I. 登録日 2008-09-30 公開日 2008-10-28 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Transcription inactivation through local refolding of the RNA polymerase structure. Nature, 457, 2009
3WOD	RNA polymerase-gp39 complex 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S. 登録日 2013-12-26 公開日 2014-03-12 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural basis for promoter specificity switching of RNA polymerase by a phage factor. Genes Dev., 28, 2014

 

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