PDB: 16 件ウェブページステータス検索Chemie searchBIRD

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7U58	YcaO-mediated ATP-dependent peptidase activity in ribosomal peptide biosynthesis 分子名称: MAGNESIUM ION, MusD, ZINC ION 著者 Zheng, Y, Nair, S.K. 登録日 2022-03-01 公開日 2022-11-02 最終更新日 2023-01-11 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 YcaO-mediated ATP-dependent peptidase activity in ribosomal peptide biosynthesis. Nat.Chem.Biol., 19, 2023
6PEU	Structure of YcaO enzyme from Methanocaldococcus jannaschii in complex with peptide 分子名称: ADENOSINE-5'-TRIPHOSPHATE, GLY-ARG-LEU-GLY-PHE-TYR-GLY-TYR-ASP-LEU-GLN-ASP, MAGNESIUM ION, ... 著者 Dong, S.-H, Nair, S.K. 登録日 2019-06-20 公開日 2019-11-06 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Mechanistic Basis for Ribosomal Peptide Backbone Modifications. Acs Cent.Sci., 5, 2019
6PE3	Structure of YcaO enzyme from Methanocaldococcus jannaschii in complex with ATP 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Uncharacterized protein MJ1094 著者 Dong, S.-H, Nair, S.K. 登録日 2019-06-19 公開日 2020-01-08 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Mechanistic Basis for Ribosomal Peptide Backbone Modifications. Acs Cent.Sci., 5, 2019
6GRG	E. coli Microcin synthetase McbBCD complex with pro-MccB17, ADP and phosphate bound 分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ... 著者 Ghilarov, D, Stevenson, C.E.M, Travin, D.Y, Piskunova, J, Serebryakova, M, Maxwell, A, Lawson, D.M, Severinov, K. 登録日 2018-06-11 公開日 2019-01-30 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Architecture of Microcin B17 Synthetase: An Octameric Protein Complex Converting a Ribosomally Synthesized Peptide into a DNA Gyrase Poison. Mol. Cell, 73, 2019
6GRI	E. coli Microcin synthetase McbBCD complex 分子名称: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, Microcin B17-processing protein McbB, ... 著者 Ghilarov, D, Stevenson, C.E.M, Travin, D.Y, Piskunova, J, Serebryakova, M, Maxwell, A, Lawson, D.M, Severinov, K. 登録日 2018-06-11 公開日 2019-01-30 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Architecture of Microcin B17 Synthetase: An Octameric Protein Complex Converting a Ribosomally Synthesized Peptide into a DNA Gyrase Poison. Mol. Cell, 73, 2019
6GRH	E. coli Microcin synthetase McbBCD complex with truncated pro-MccB17 bound 分子名称: 1,2-ETHANEDIOL, Bacteriocin microcin B17, CHLORIDE ION, ... 著者 Ghilarov, D, Stevenson, C.E.M, Travin, D.Y, Piskunova, J, Serebryakova, M, Maxwell, A, Lawson, D.M, Severinov, K. 登録日 2018-06-11 公開日 2019-01-30 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Architecture of Microcin B17 Synthetase: An Octameric Protein Complex Converting a Ribosomally Synthesized Peptide into a DNA Gyrase Poison. Mol. Cell, 73, 2019
6GOS	E. coli Microcin synthetase McbBCD complex with pro-MccB17 bound 分子名称: 1,2-ETHANEDIOL, Bacteriocin microcin B17, CHLORIDE ION, ... 著者 Ghilarov, D, Stevenson, C.E.M, Travin, D.Y, Piskunova, J, Serebryakova, M, Maxwell, A, Lawson, D.M, Severinov, K. 登録日 2018-06-04 公開日 2019-01-30 最終更新日 2019-03-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Architecture of Microcin B17 Synthetase: An Octameric Protein Complex Converting a Ribosomally Synthesized Peptide into a DNA Gyrase Poison. Mol. Cell, 73, 2019
6CIB	The structure of YcaO from Methanopyrus kandleri bound with AMPPCP and Mg2+ 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, OXAMIC ACID, ... 著者 Dong, S.-H, Nair, S.K. 登録日 2018-02-23 公開日 2018-03-21 最終更新日 2018-03-28 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Enzymatic reconstitution of ribosomal peptide backbone thioamidation. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6CI7	The structure of YcaO from Methanopyrus kandleri bound with AMPPCP and Mg2+ 分子名称: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, YcaO 著者 Dong, S.-H, Nair, S.K. 登録日 2018-02-23 公開日 2018-03-21 最終更新日 2018-03-28 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Enzymatic reconstitution of ribosomal peptide backbone thioamidation. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4V1V	Heterocyclase in complex with substrate and Cofactor 分子名称: LYND, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Koehnke, J, Naismith, J.H. 登録日 2014-10-02 公開日 2015-01-14 最終更新日 2015-08-05 実験手法 X-RAY DIFFRACTION (3.01 Å) 主引用文献 Structural Analysis of Leader Peptide Binding Enables Leader-Free Cyanobactin Processing. Nat.Chem.Biol., 11, 2015
4V1T	Heterocyclase in complex with substrate and Cofactor 分子名称: ADENOSINE-5'-DIPHOSPHATE, LYND, MAGNESIUM ION, ... 著者 Koehnke, J, Naismith, J.H. 登録日 2014-10-02 公開日 2015-01-14 最終更新日 2018-06-20 実験手法 X-RAY DIFFRACTION (2.14 Å) 主引用文献 Structural Analysis of Leader Peptide Binding Enables Leader-Free Cyanobactin Processing Nat.Chem.Biol., 11, 2015
4V1U	Heterocyclase in complex with substrate and Cofactor 分子名称: ADENOSINE MONOPHOSPHATE, CALCIUM ION, LYND, ... 著者 Koehnke, J, Naismith, J.H. 登録日 2014-10-02 公開日 2015-01-14 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.86 Å) 主引用文献 Structural Analysis of Leader Peptide Binding Enables Leader-Free Cyanobactin Processing. Nat.Chem.Biol., 11, 2015
4Q85	YcaO with Non-hydrolyzable ATP (AMPCPP) Bound 分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MAGNESIUM ION, Ribosomal protein S12 methylthiotransferase accessory factor YcaO 著者 Chekan, J.R, Nair, S.K. 登録日 2014-04-25 公開日 2014-08-13 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.29 Å) 主引用文献 Discovery of a new ATP-binding motif involved in peptidic azoline biosynthesis. Nat.Chem.Biol., 10, 2014
4Q86	YcaO with AMP Bound 分子名称: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, Ribosomal protein S12 methylthiotransferase accessory factor YcaO 著者 Chekan, J.R, Nair, S.K. 登録日 2014-04-25 公開日 2014-08-13 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Discovery of a new ATP-binding motif involved in peptidic azoline biosynthesis. Nat.Chem.Biol., 10, 2014
4Q84	Apo YcaO 分子名称: MERCURY (II) ION, Ribosomal protein S12 methylthiotransferase accessory factor YcaO 著者 Chekan, J.R, Nair, S.K. 登録日 2014-04-25 公開日 2014-08-13 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.64 Å) 主引用文献 Discovery of a new ATP-binding motif involved in peptidic azoline biosynthesis. Nat.Chem.Biol., 10, 2014
4BS9	Structure of the heterocyclase TruD 分子名称: TRUD, ZINC ION 著者 Koehnke, J, Bent, A.F, Zollman, D, Smith, K, Houssen, W.E, Zhu, X, Mann, G, Lebl, T, Scharff, R, Shirran, S, Botting, C.H, Jaspars, M, Schwarz-Linek, U, Naismith, J.H. 登録日 2013-06-09 公開日 2013-11-06 最終更新日 2014-01-08 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The Cyanobactin Heterocyclase Enzyme: A Processive Adenylase that Operates with a Defined Order of Reaction. Angew.Chem.Int.Ed.Engl., 52, 2013