Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7E15
DownloadVisualize
BU of 7e15 by Molmil
Protein ternary complex working for DNA replication initiation
分子名称: DNA polymerase II small subunit, Gins51, SsDNA-specific exonuclease
著者Oyama, T, Ishino, Y.
登録日2021-01-30
公開日2021-10-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Family D DNA polymerase interacts with GINS to promote CMG-helicase in the archaeal replisome.
Nucleic Acids Res., 50, 2022
7BMF
DownloadVisualize
BU of 7bmf by Molmil
Crystal structure of RecJCdc45 from Methanothermobacter thermoautotroficus in complex with dCTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Conserved protein, DI(HYDROXYETHYL)ETHER, ...
著者De March, M, Onesti, S.
登録日2021-01-20
公開日2022-08-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of RecJCdc45 from Methanothermobacter thermoautotroficus
To Be Published
7BJQ
DownloadVisualize
BU of 7bjq by Molmil
Crystal structure of RecJCdc45 from Methanothermobacter thermoautotroficus in complex with ssDNA
分子名称: Conserved protein, DNA (5'-D(*5P*'P*-P*CP*AP*TP*GP*GP*CP*-P*3P*')-3'), MANGANESE (II) ION
著者De March, M, Onesti, S.
登録日2021-01-14
公開日2022-07-27
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of RecJCdc45 from Methanothermobacter thermoautotroficus
To Be Published
7BIH
DownloadVisualize
BU of 7bih by Molmil
Crystal structure of RecJ-Cdc45 from Methanothermobacter Thermoautotrophicus in the closed state.
分子名称: Conserved protein, DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, ...
著者De March, M, Onesti, S.
登録日2021-01-12
公開日2022-07-27
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of RecJ-Cdc45 from Methanothermobacter Thermoautotrophicus
To Be Published
7BHI
DownloadVisualize
BU of 7bhi by Molmil
Crystal structure of RecJ-Cdc45 from Methanothermobacter Thermoautotrophicus
分子名称: Conserved protein, MANGANESE (II) ION
著者De March, M, Onesti, S.
登録日2021-01-11
公開日2022-07-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of RecJ-Cdc45 from Methanothermobacter Thermoautotrophicus
To Be Published
6LRD
DownloadVisualize
BU of 6lrd by Molmil
Structure of RecJ complexed with a 5'-P-dSpacer-modified ssDNA
分子名称: ASP-LEU-PRO-PHE, DNA (5'-D(P*(3DR)P*TP*TP*TP*TP*T)-3'), MANGANESE (II) ION, ...
著者Cheng, K, Hua, Y.
登録日2020-01-16
公開日2020-08-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.901335 Å)
主引用文献Participation of RecJ in the base excision repair pathway of Deinococcus radiodurans.
Nucleic Acids Res., 48, 2020
6LL8
DownloadVisualize
BU of 6ll8 by Molmil
Type II inorganic pyrophosphatase (PPase) from the psychrophilic bacterium Shewanella sp. AS-11, Mg-PNP form
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, FLUORIDE ION, ...
著者Horitani, M, Kusubayashi, K, Oshima, K, Yato, A, Sugimoto, H, Watanabe, K.
登録日2019-12-21
公開日2020-03-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献X-ray Crystallography and Electron Paramagnetic Resonance Spectroscopy Reveal Active Site Rearrangement of Cold-Adapted Inorganic Pyrophosphatase.
Sci Rep, 10, 2020
6LL7
DownloadVisualize
BU of 6ll7 by Molmil
Type II inorganic pyrophosphatase (PPase) from the psychrophilic bacterium Shewanella sp. AS-11, Mn-activated form
分子名称: CALCIUM ION, Inorganic pyrophosphatase, MANGANESE (II) ION
著者Horitani, M, Kusubayashi, K, Oshima, K, Yato, A, Sugimoto, H, Watanabe, K.
登録日2019-12-21
公開日2020-03-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献X-ray Crystallography and Electron Paramagnetic Resonance Spectroscopy Reveal Active Site Rearrangement of Cold-Adapted Inorganic Pyrophosphatase.
Sci Rep, 10, 2020
5XT3
DownloadVisualize
BU of 5xt3 by Molmil
The catalytic domain of GdpP with c-di-GMP
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), MANGANESE (II) ION, Phosphodiesterase acting on cyclic dinucleotides
著者Wang, F, Gu, L.
登録日2017-06-16
公開日2018-01-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.591 Å)
主引用文献Structural and biochemical characterization of the catalytic domains of GdpP reveals a unified hydrolysis mechanism for the DHH/DHHA1 phosphodiesterase
Biochem. J., 475, 2018
5XSP
DownloadVisualize
BU of 5xsp by Molmil
The catalytic domain of GdpP with 5'-pApA
分子名称: ADENOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, Phosphodiesterase acting on cyclic dinucleotides
著者Wang, F, Gu, L.
登録日2017-06-15
公開日2018-01-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.146 Å)
主引用文献Structural and biochemical characterization of the catalytic domains of GdpP reveals a unified hydrolysis mechanism for the DHH/DHHA1 phosphodiesterase
Biochem. J., 475, 2018
5XSN
DownloadVisualize
BU of 5xsn by Molmil
The catalytic domain of GdpP with c-di-AMP
分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, MANGANESE (II) ION, Phosphodiesterase acting on cyclic dinucleotides
著者Wang, F, Gu, L.
登録日2017-06-14
公開日2018-01-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献Structural and biochemical characterization of the catalytic domains of GdpP reveals a unified hydrolysis mechanism for the DHH/DHHA1 phosphodiesterase
Biochem. J., 475, 2018
5XSI
DownloadVisualize
BU of 5xsi by Molmil
The catalytic domain of GdpP
分子名称: MANGANESE (II) ION, Phosphodiesterase acting on cyclic dinucleotides
著者Wang, F, Gu, L.
登録日2017-06-14
公開日2018-01-31
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural and biochemical characterization of the catalytic domains of GdpP reveals a unified hydrolysis mechanism for the DHH/DHHA1 phosphodiesterase
Biochem. J., 475, 2018
5X4K
DownloadVisualize
BU of 5x4k by Molmil
The complex crystal structure of Pyrococcus furiosus RecJ and CMP
分子名称: CYTIDINE-5'-MONOPHOSPHATE, Uncharacterized protein, ZINC ION
著者Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P.
登録日2017-02-13
公開日2018-02-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.749 Å)
主引用文献The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45.
Nucleic Acids Res., 45, 2017
5X4J
DownloadVisualize
BU of 5x4j by Molmil
The crystal structure of Pyrococcus furiosus RecJ (Zn-soaking)
分子名称: CHLORIDE ION, Uncharacterized protein, ZINC ION
著者Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P.
登録日2017-02-13
公開日2018-02-14
最終更新日2019-12-18
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45.
Nucleic Acids Res., 45, 2017
5X4I
DownloadVisualize
BU of 5x4i by Molmil
Pyrococcus furiosus RecJ (D83A, Mn-soaking)
分子名称: CHLORIDE ION, MANGANESE (II) ION, Uncharacterized protein
著者Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P.
登録日2017-02-13
公開日2018-02-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.092 Å)
主引用文献The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45.
Nucleic Acids Res., 45, 2017
5X4H
DownloadVisualize
BU of 5x4h by Molmil
The crystal structure of Pyrococcus furiosus RecJ (wild-type)
分子名称: MAGNESIUM ION, Uncharacterized protein
著者Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P.
登録日2017-02-13
公開日2018-02-14
最終更新日2019-12-18
実験手法X-RAY DIFFRACTION (2.801 Å)
主引用文献The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45.
Nucleic Acids Res., 45, 2017
5O7F
DownloadVisualize
BU of 5o7f by Molmil
Structure of the inactive T.maritima PDE (TM1595) D80N D154N mutant with GMP and Mn2+
分子名称: 1,2-ETHANEDIOL, GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, ...
著者Witte, G, Drexler, D, Mueller, M.
登録日2017-06-08
公開日2017-10-25
最終更新日2017-12-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural and Biophysical Analysis of the Soluble DHH/DHHA1-Type Phosphodiesterase TM1595 from Thermotoga maritima.
Structure, 25, 2017
5O70
DownloadVisualize
BU of 5o70 by Molmil
Structure of the inactive T.maritima PDE (TM1595) D80N D154N mutant with reaction products 2 AMP
分子名称: ADENOSINE MONOPHOSPHATE, GLYCEROL, SULFATE ION, ...
著者Witte, G, Drexler, D.
登録日2017-06-07
公開日2017-10-25
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural and Biophysical Analysis of the Soluble DHH/DHHA1-Type Phosphodiesterase TM1595 from Thermotoga maritima.
Structure, 25, 2017
5O58
DownloadVisualize
BU of 5o58 by Molmil
Structure of the inactive T.maritima PDE (TM1595) D80N D154N mutant with substrate 5'-pApG
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, ISOPROPYL ALCOHOL, ...
著者Witte, G, Drexler, D, Mueller, M.
登録日2017-06-01
公開日2017-10-25
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural and Biophysical Analysis of the Soluble DHH/DHHA1-Type Phosphodiesterase TM1595 from Thermotoga maritima.
Structure, 25, 2017
5O4Z
DownloadVisualize
BU of 5o4z by Molmil
Structure of the inactive T.maritima PDE (TM1595) D80N D154N mutant with substrate 5'-pApA
分子名称: ADENOSINE-5'-MONOPHOSPHATE, CHLORIDE ION, DHH/DHHA1-type phosphodiesterase TM1595, ...
著者Witte, G, Drexler, D, Mueller, M.
登録日2017-05-31
公開日2017-10-25
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural and Biophysical Analysis of the Soluble DHH/DHHA1-Type Phosphodiesterase TM1595 from Thermotoga maritima.
Structure, 25, 2017
5O25
DownloadVisualize
BU of 5o25 by Molmil
Structure of wildtype T.maritima PDE (TM1595) in ligand-free state
分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, ...
著者Witte, G, Drexler, D, Mueller, M.
登録日2017-05-19
公開日2017-10-25
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural and Biophysical Analysis of the Soluble DHH/DHHA1-Type Phosphodiesterase TM1595 from Thermotoga maritima.
Structure, 25, 2017
5O1U
DownloadVisualize
BU of 5o1u by Molmil
Structure of wildtype T.maritima PDE (TM1595) with AMP and Mn2+
分子名称: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, CALCIUM ION, ...
著者Witte, G, Drexler, D, Mueller, M.
登録日2017-05-19
公開日2017-10-25
最終更新日2017-12-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural and Biophysical Analysis of the Soluble DHH/DHHA1-Type Phosphodiesterase TM1595 from Thermotoga maritima.
Structure, 25, 2017
5JJU
DownloadVisualize
BU of 5jju by Molmil
Crystal structure of Rv2837c complexed with 5'-pApA and 5'-AMP
分子名称: ADENOSINE MONOPHOSPHATE, MANGANESE (II) ION, RNA (5'-R(P*AP*A)-3'), ...
著者Wang, F, He, Q, Liu, S, Gu, L.
登録日2016-04-25
公開日2016-05-04
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.312 Å)
主引用文献Structural and biochemical insight into the mechanism of Rv2837c from Mycobacterium tuberculosis as a c-di-NMP phosphodiesterase
J.Biol.Chem., 291, 2016
5J21
DownloadVisualize
BU of 5j21 by Molmil
Structure of Bacillus NanoRNase A (WT)
分子名称: Bifunctional oligoribonuclease and PAP phosphatase NrnA
著者Schmier, B.J, Malhotra, A, Nelersa, C.M.
登録日2016-03-29
公開日2017-08-02
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Basis for the Bidirectional Activity of Bacillus nanoRNase NrnA.
Sci Rep, 7, 2017
5IZO
DownloadVisualize
BU of 5izo by Molmil
Bacillus NanoRNase A (H103A) + 2 divalent cations + PO4 at the active site
分子名称: Bifunctional oligoribonuclease and PAP phosphatase NrnA, MANGANESE (II) ION, PHOSPHATE ION
著者Schmier, B.J, Malhotra, A, Nelersa, C.M.
登録日2016-03-25
公開日2017-08-02
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural Basis for the Bidirectional Activity of Bacillus nanoRNase NrnA.
Sci Rep, 7, 2017

 

123>

217705

件を2024-03-27に公開中

PDB statisticsPDBj update infoContact PDBjnumon