PDB: 125 件ウェブページステータス検索Chemie searchBIRD

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6PTH	Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Pseudomonas aeruginosa bound to griselimycin 分子名称: Beta sliding clamp, Griselimycin, SULFATE ION 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2019-07-15 公開日 2019-08-07 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Pseudomonas aeruginosa bound to griselimycin To Be Published
7EVP	Cryo-EM structure of the Gp168-beta-clamp complex 分子名称: Beta sliding clamp, Sliding clamp inhibitor 著者 Liu, B, Li, S, Liu, Y, Chen, H, Hu, Z, Wang, Z, Gou, L, Zhang, L, Ma, B, Wang, H, Matthews, S, Wang, Y, Zhang, K. 登録日 2021-05-21 公開日 2022-02-16 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Bacteriophage Twort protein Gp168 is a beta-clamp inhibitor by occupying the DNA sliding channel. Nucleic Acids Res., 49, 2021
5M1S	Cryo-EM structure of the E. coli replicative DNA polymerase-clamp-exonuclase-theta complex bound to DNA in the editing mode 分子名称: DNA Primer Strand, DNA Template Strand, DNA polymerase III subunit alpha, ... 著者 Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. 登録日 2016-10-10 公開日 2017-01-18 最終更新日 2018-10-24 実験手法 ELECTRON MICROSCOPY (6.7 Å) 主引用文献 Self-correcting mismatches during high-fidelity DNA replication. Nat. Struct. Mol. Biol., 24, 2017
1OK7	A Conserved protein binding-site on Bacterial Sliding Clamps 分子名称: DNA POLYMERASE III, DNA POLYMERASE IV 著者 Burnouf, D.Y, Olieric, V, Wagner, J, Fujii, S, Reinbolt, J, Fuchs, R.P.P, Dumas, P. 登録日 2003-07-18 公開日 2004-07-15 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Structural and Biochemical Analysis of Sliding Clamp/Ligand Interactions Suggest a Competition between Replicative and Translesion DNA Polymerases J.Mol.Biol., 335, 2004
7YBD	Crystal structure of sliding DNA clamp of Clostridioides difficile 分子名称: Beta sliding clamp, TRIETHYLENE GLYCOL 著者 Hishiki, A, Okazaki, S, Hara, K, Hashimoto, H. 登録日 2022-06-29 公開日 2022-10-19 最終更新日 2023-01-11 実験手法 X-RAY DIFFRACTION (2.13 Å) 主引用文献 Crystal structure of the sliding DNA clamp from the Gram-positive anaerobic bacterium Clostridioides difficile. J.Biochem., 173, 2022
7RZM	Crystal Structure of dnaN DNA polymerase III beta subunit from Stenotrophomonas maltophilia K279a 分子名称: DNA polymerase III subunit beta 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2021-08-27 公開日 2021-10-20 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal Structure of dnaN DNA polymerase III beta subunit from Stenotrophomonas maltophilia K279a To Be Published
2XUR	The G157C mutation in the Escherichia coli sliding clamp specifically affects initiation of replication 分子名称: DNA POLYMERASE III SUBUNIT BETA 著者 Johnsen, L, Morigen, Dalhus, B, Bjoras, M, Flaatten, I, Waldminghaus, T, Skarstad, K. 登録日 2010-10-20 公開日 2011-02-16 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The G157C Mutation in the Escherichia Coli Sliding Clamp Specifically Affects Initiation of Replication. Mol.Microbiol., 79, 2011
2POL	THREE-DIMENSIONAL STRUCTURE OF THE BETA SUBUNIT OF ESCHERICHIA COLI DNA POLYMERASE III HOLOENZYME: A SLIDING DNA CLAMP 分子名称: DNA POLYMERASE III (BETA SUBUNIT) 著者 Kong, X.-P, Kuriyan, J. 登録日 1992-11-13 公開日 1994-01-31 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp. Cell(Cambridge,Mass.), 69, 1992
5G4Q	H.pylori Beta clamp in complex with 5-chloroisatin 分子名称: 5-chloro-1H-indole-2,3-dione, DNA POLYMERASE III SUBUNIT BETA 著者 Pandey, P, Gourinath, S. 登録日 2016-05-16 公開日 2017-06-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Screening of E. coli beta-clamp Inhibitors Revealed that Few Inhibit Helicobacter pylori More Effectively: Structural and Functional Characterization. Antibiotics (Basel), 7, 2018
5G48	H.pylori Beta clamp in complex with Diflunisal 分子名称: 5-(2,4-DIFLUOROPHENYL)-2-HYDROXY-BENZOIC ACID, DNA POLYMERASE III SUBUNIT BETA 著者 Pandey, P, Gourinath, S. 登録日 2016-05-06 公開日 2017-06-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Targeting the beta-clamp in Helicobacter pylori with FDA-approved drugs reveals micromolar inhibition by diflunisal. FEBS Lett., 591, 2017
3RB9	Crystal structure of the M. tuberculosis beta clamp 分子名称: DNA polymerase III subunit beta 著者 Kukshal, V, Ramachandran, R. 登録日 2011-03-29 公開日 2012-04-04 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 M. tuberculosis Sliding beta-Clamp Does Not Interact Directly with the NAD(+)-Dependent DNA Ligase Plos One, 7, 2012
3T0P	Crystal structure of a Putative DNA polymerase III beta subunit (EUBREC_0002; ERE_29750) from Eubacterium rectale ATCC 33656 at 2.26 A resolution 分子名称: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ... 著者 Joint Center for Structural Genomics (JCSG) 登録日 2011-07-20 公開日 2011-08-10 最終更新日 2023-02-01 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 Crystal structure of a Putative DNA polymerase III beta subunit (EUBREC_0002; ERE_29750) from Eubacterium rectale ATCC 33656 at 2.26 A resolution To be published
2AVT	Crystal structure of the beta subunit from DNA polymerase of Streptococcus pyogenes 分子名称: DNA polymerase III beta subunit 著者 Argiriadi, M.A, Goedken, E.R, Bruck, I, O'donnell, M, Kuriyan, J. 登録日 2005-08-30 公開日 2006-01-24 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of a DNA polymerase sliding clamp from a Gram-positive bacterium. Bmc Struct.Biol., 6, 2006
2AWA	Crystal structure of DNA polymerase III, beta chain (EC 2.7.7.7) (np_344555.1) from STREPTOCOCCUS PNEUMONIAE TIGR4 at 2.50 A resolution 分子名称: DNA polymerase III, beta chain, GLYCEROL 著者 Joint Center for Structural Genomics (JCSG) 登録日 2005-08-31 公開日 2005-09-20 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of DNA polymerase III, beta chain (EC 2.7.7.7) (np_344555.1) from STREPTOCOCCUS PNEUMONIAE TIGR4 at 2.50 A resolution To be published
1UNN	Complex of beta-clamp processivity factor and little finger domain of PolIV 分子名称: DNA POLYMERASE III BETA SUBUNIT, DNA POLYMERASE IV, SULFATE ION 著者 Bunting, K.A, Roe, S.M, Pearl, L.H. 登録日 2003-09-11 公開日 2003-11-06 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural Basis for Recruitment of Translesion DNA Polymerase Pol Iv/Dinb to the Beta-Clamp Embo J., 22, 2003
6PTR	Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Bartonella birtlesii bound to griselimycin 分子名称: 1,2-ETHANEDIOL, ACE-MVA-MP8-NZC-LEU-MP8-LEU-MVA-PRO-MLU-GLY, Beta sliding clamp, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2019-07-16 公開日 2019-08-07 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Bartonella birtlesii bound to griselimycin To Be Published
6PTV	Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Rickettsia rickettsii bound to griselimycin 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACE-MVA-MP8-NZC-LEU-MP8-LEU-MVA-PRO-MLU-GLY, Beta sliding clamp 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2019-07-16 公開日 2019-08-07 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Rickettsia rickettsii bound to griselimycin To Be Published
8PAT	Structure of the E.coli DNA polymerase sliding clamp with a covalently bound peptide 3. 分子名称: ACE-GLN-ALC-GLX-LEU-PHE, Beta sliding clamp 著者 Compain, G, Monsarrat, C, Blagojevic, J, Brillet, K, Dumas, P, Hammann, P, Kuhn, L, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Burnouf, D, Guichard, G. 登録日 2023-06-08 公開日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Peptide-Based Covalent Inhibitors Bearing Mild Electrophiles to Target a Conserved His Residue of the Bacterial Sliding Clamp. Jacs Au, 4, 2024
8PAY	Structure of the E.coli DNA polymerase sliding clamp with a covalently bound peptide 2. 分子名称: ACE-GLN-ALC-GLC-LEU-PHE, Beta sliding clamp, GLYCEROL, ... 著者 Compain, G, Monsarrat, C, Blagojevic, J, Brillet, K, Dumas, P, Hammann, P, Kuhn, L, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Burnouf, D, wagner, J, Guichard, G. 登録日 2023-06-08 公開日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.21 Å) 主引用文献 Peptide-Based Covalent Inhibitors Bearing Mild Electrophiles to Target a Conserved His Residue of the Bacterial Sliding Clamp. Jacs Au, 4, 2024
1VPK	Crystal structure of DNA polymerase III, beta subunit (TM0262) from Thermotoga maritima at 2.00 A resolution 分子名称: DNA polymerase III, beta subunit 著者 Joint Center for Structural Genomics (JCSG) 登録日 2004-11-09 公開日 2004-11-23 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of DNA polymerase III, beta subunit (TM0262) from Thermotoga maritima at 2.00 A resolution To be published
6IZO	Crystal structure of DNA polymerase sliding clamp from Caulobacter crescentus 分子名称: 1,2-ETHANEDIOL, Beta sliding clamp, DI(HYDROXYETHYL)ETHER 著者 Jiang, X, Zhang, L, Teng, M, Li, X. 登録日 2018-12-20 公開日 2019-11-27 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Caulobacter crescentus beta sliding clamp employs a noncanonical regulatory model of DNA replication. Febs J., 287, 2020
6JIR	Crystal structure of C. crescentus beta sliding clamp with PEG bound to putative beta-motif tethering region 分子名称: 1,2-ETHANEDIOL, Beta sliding clamp, DI(HYDROXYETHYL)ETHER, ... 著者 Jiang, X, Teng, M, Li, X. 登録日 2019-02-23 公開日 2019-11-27 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Caulobacter crescentus beta sliding clamp employs a noncanonical regulatory model of DNA replication. Febs J., 287, 2020
1JQL	Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of beta-delta (1-140) 分子名称: DNA Polymerase III, BETA CHAIN, DELTA SUBUNIT 著者 Jeruzalmi, D, Yurieva, O, Zhao, Y, Young, M, Stewart, J, Hingorani, M, O'Donnell, M, Kuriyan, J. 登録日 2001-08-07 公開日 2001-09-26 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III. Cell(Cambridge,Mass.), 106, 2001
1JQJ	Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of the beta-delta complex 分子名称: DNA polymerase III, beta chain, delta subunit 著者 Jeruzalmi, D, Yurieva, O, Zhao, Y, Young, M, Stewart, J, Hingorani, M, O'Donnell, M, Kuriyan, J. 登録日 2001-08-07 公開日 2001-11-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III. Cell(Cambridge,Mass.), 106, 2001
6AP4	Crystal structure of the DNA polymerase III subunit beta from Acinetobacter baumannii 分子名称: DNA polymerase III subunit beta, MAGNESIUM ION 著者 McGrath, A.E, Oakley, A.J. 登録日 2017-08-16 公開日 2017-12-20 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Crystal structures and biochemical characterization of DNA sliding clamps from three Gram-negative bacterial pathogens. J. Struct. Biol., 204, 2018

 

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