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1U61
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Crystal Structure of Putative Ribonuclease III from Bacillus cereus
分子名称: hypothetical protein
著者Osipiuk, J, Quartey, P, Moy, S, Collart, F, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2004-07-29
公開日2004-09-21
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献X-ray crystal structure of conserved hypothetical protein from Bacillus cereus
To be Published
1I4S
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BU of 1i4s by Molmil
CRYSTAL STRUCTURE OF RNASE III ENDONUCLEASE DOMAIN FROM AQUIFEX AEOLICUS AT 2.15 ANGSTROM RESOLUTION
分子名称: RIBONUCLEASE III
著者Blaszczyk, J, Ji, X.
登録日2001-02-22
公開日2001-12-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystallographic and modeling studies of RNase III suggest a mechanism for double-stranded RNA cleavage.
Structure, 9, 2001
1JFZ
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BU of 1jfz by Molmil
Crystal Structure of MN(II)-Complex of RNAse III Endonuclease Domain from Aquifex Aeolicus at 2.10 Angstrom Resolution
分子名称: MANGANESE (II) ION, RIBONUCLEASE III
著者Blaszczyk, J, Ji, X.
登録日2001-06-22
公開日2001-12-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystallographic and modeling studies of RNase III suggest a mechanism for double-stranded RNA cleavage.
Structure, 9, 2001
1RC5
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BU of 1rc5 by Molmil
CRYSTAL STRUCTURE OF MG(II)-COMPLEX OF RNASE III ENDONUCLEASE DOMAIN FROM AQUIFEX AEOLICUS AT 2.30 ANGSTROM RESOLUTION
分子名称: MAGNESIUM ION, Ribonuclease III
著者Blaszczyk, J, Gan, J, Ji, X.
登録日2003-11-03
公開日2004-03-30
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Noncatalytic Assembly of Ribonuclease III with Double-Stranded RNA.
Structure, 12, 2004
2GSL
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BU of 2gsl by Molmil
X-Ray Crystal Structure of Protein FN1578 from Fusobacterium nucleatum. Northeast Structural Genomics Consortium Target NR1.
分子名称: Hypothetical protein, MAGNESIUM ION
著者Forouhar, F, Su, M, Jayaraman, S, Conover, K, Janjua, H, Xiao, R, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2006-04-26
公開日2006-05-09
最終更新日2018-01-24
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structure of the Hypothetical Protein (FN1578) from Fusobacterium nucleatum, NESG Target NR1
To be Published
4OUN
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BU of 4oun by Molmil
Crystal Structure of Mini-ribonuclease 3 from Bacillus subtilis
分子名称: Mini-ribonuclease 3
著者Chojnowski, G, Czarnecka, J, Nowak, E, Pianka, D, Glow, D, Sabala, I, Skowronek, K, Nowotny, M, Bujnicki, J.M.
登録日2014-02-18
公開日2015-02-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Sequence-specific cleavage of dsRNA by Mini-III RNase
Nucleic Acids Res., 43, 2015
2EB1
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BU of 2eb1 by Molmil
Crystal Structure of the C-Terminal RNase III Domain of Human Dicer
分子名称: Endoribonuclease Dicer, MAGNESIUM ION
著者Takeshita, D, Zenno, S, Lee, W.C, Nagata, K, Saigo, K, Tanokura, M.
登録日2007-02-05
公開日2007-11-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Homodimeric Structure and Double-stranded RNA Cleavage Activity of the C-terminal RNase III Domain of Human Dicer
J.Mol.Biol., 374, 2007
3RV1
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Crystal structure of the N-terminal and RNase III domains of K. polysporus Dcr1 E224Q mutant
分子名称: K. polysporus Dcr1
著者Nakanishi, K, Weinberg, D.E, Bartel, D.P, Patel, D.J.
登録日2011-05-05
公開日2011-08-03
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.975 Å)
主引用文献The inside-out mechanism of dicers from budding yeasts.
Cell(Cambridge,Mass.), 146, 2011
3C4B
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BU of 3c4b by Molmil
Structure of RNaseIIIb and dsRNA binding domains of mouse Dicer
分子名称: Endoribonuclease Dicer
著者Lee, J.K, Du, Z, Tjhen, R.J, Stroud, R.M, James, T.L.
登録日2008-01-29
公開日2008-02-19
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Structural and biochemical insights into the dicing mechanism of mouse Dicer: A conserved lysine is critical for dsRNA cleavage.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3C4T
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BU of 3c4t by Molmil
Structure of RNaseIIIb and dsRNA binding domains of mouse Dicer
分子名称: CADMIUM ION, Endoribonuclease Dicer
著者Lee, J.K, Du, Z, Tjhen, R.J, Stroud, R.M, James, T.L.
登録日2008-01-30
公開日2008-02-19
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural and biochemical insights into the dicing mechanism of mouse Dicer: A conserved lysine is critical for dsRNA cleavage.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2FFL
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BU of 2ffl by Molmil
Crystal Structure of Dicer from Giardia intestinalis
分子名称: Dicer, MANGANESE (II) ION
著者Doudna, J.A, MacRae, I.J, Adams, P.D.
登録日2005-12-19
公開日2006-01-24
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.33 Å)
主引用文献Structural Basis of Double-Stranded RNA Processing by Dicer
Science, 311, 2006
2QVW
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Structure of Giardia Dicer refined against twinned data
分子名称: GLP_546_48378_50642, MANGANESE (II) ION
著者Doudna, J.A, MacRae, I.J.
登録日2007-08-09
公開日2007-09-25
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献An unusual case of pseudo-merohedral twinning in orthorhombic crystals of Dicer
Acta Crystallogr.,Sect.D, 63, 2007
6BU9
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BU of 6bu9 by Molmil
Drosophila Dicer-2 bound to blunt dsRNA
分子名称: Dicer-2, isoform A, RNA (5'-R(*AP*CP*UP*AP*CP*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*C)-3'), ...
著者Shen, P.S, Sinha, N.K, Bass, B.L.
登録日2017-12-09
公開日2017-12-27
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (6.8 Å)
主引用文献Dicer uses distinct modules for recognizing dsRNA termini.
Science, 359, 2018
5B16
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BU of 5b16 by Molmil
X-ray structure of DROSHA in complex with the C-terminal tail of DGCR8.
分子名称: Microprocessor complex subunit DGCR8, Ribonuclease 3,DROSHA,Ribonuclease 3,DROSHA,Ribonuclease 3, ZINC ION
著者Kwon, S.C, Nguyen, T.A, Choi, Y.G, Jo, M.H, Hohng, S, Kim, V.N, Woo, J.S.
登録日2015-11-23
公開日2016-02-03
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structure of Human DROSHA
Cell, 164, 2016
5T16
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BU of 5t16 by Molmil
Crystal structure of yeast RNase III (Rnt1p) complexed with a non-hydrolyzable RNA substrate analog
分子名称: 1,2-ETHANEDIOL, RNA substrate analog, Ribonuclease 3
著者Song, H, Ji, X.
登録日2016-08-18
公開日2017-02-08
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.783 Å)
主引用文献The Functional Cycle of Rnt1p: Five Consecutive Steps of Double-Stranded RNA Processing by a Eukaryotic RNase III.
Structure, 25, 2017
3J6B
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Structure of the yeast mitochondrial large ribosomal subunit
分子名称: 21S ribosomal RNA, 54S ribosomal protein IMG1, mitochondrial, ...
著者Amunts, A, Brown, A, Bai, X.C, Llacer, J.L, Hussain, T, Emsley, P, Long, F, Murshudov, G, Scheres, S.H.W, Ramakrishnan, V.
登録日2014-01-22
公開日2014-04-09
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure of the yeast mitochondrial large ribosomal subunit.
Science, 343, 2014
8HF0
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BU of 8hf0 by Molmil
DmDcr-2/R2D2/LoqsPD with 50bp-dsRNA in Dimer state
分子名称: Dicer-2, isoform A, LD06392p, ...
著者Su, S, Wang, J, Wang, H.W, Ma, J.
登録日2022-11-09
公開日2023-09-06
実験手法ELECTRON MICROSCOPY (3.72 Å)
主引用文献Structural mechanism of R2D2 and Loqs-PD synergistic modulation on DmDcr-2 oligomers.
Nat Commun, 14, 2023
8HF1
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DmDcr-2/R2D2/LoqsPD with 19bp-dsRNA in Trimer state
分子名称: Dicer-2, isoform A, LD06392p, ...
著者Su, S, Wang, J, Ma, J.
登録日2022-11-09
公開日2023-09-06
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural mechanism of R2D2 and Loqs-PD synergistic modulation on DmDcr-2 oligomers.
Nat Commun, 14, 2023
3RV0
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BU of 3rv0 by Molmil
Crystal structure of K. polysporus Dcr1 without the C-terminal dsRBD
分子名称: K. polysporus Dcr1, MAGNESIUM ION
著者Nakanishi, K, Weinberg, D.E, Bartel, D.P, Patel, D.J.
登録日2011-05-05
公開日2011-08-03
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献The inside-out mechanism of dicers from budding yeasts.
Cell(Cambridge,Mass.), 146, 2011
6LXD
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BU of 6lxd by Molmil
Pri-miRNA bound DROSHA-DGCR8 complex
分子名称: Microprocessor complex subunit DGCR8, RNA (102-mer), Ribonuclease 3, ...
著者Jin, W, Wang, J, Liu, C.P, Wang, H.W, Xu, R.M.
登録日2020-02-10
公開日2020-04-15
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural Basis for pri-miRNA Recognition by Drosha.
Mol.Cell, 78, 2020
6LXE
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BU of 6lxe by Molmil
DROSHA-DGCR8 complex
分子名称: Microprocessor complex subunit DGCR8, Ribonuclease 3, ZINC ION
著者Jin, W, Wang, J, Liu, C.P, Wang, H.W, Xu, R.M.
登録日2020-02-10
公開日2020-04-15
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Structural Basis for pri-miRNA Recognition by Drosha.
Mol.Cell, 78, 2020
1RC7
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BU of 1rc7 by Molmil
Crystal structure of RNase III Mutant E110K from Aquifex Aeolicus complexed with ds-RNA at 2.15 Angstrom Resolution
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3', Ribonuclease III
著者Blaszczyk, J, Gan, J, Ji, X.
登録日2003-11-03
公開日2004-03-30
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Noncatalytic Assembly of Ribonuclease III with Double-Stranded RNA.
Structure, 12, 2004
2EZ6
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Crystal structure of Aquifex aeolicus RNase III (D44N) complexed with product of double-stranded RNA processing
分子名称: 28-MER, MAGNESIUM ION, Ribonuclease III
著者Gan, J, Tropea, J.E, Austin, B.P, Court, D.L, Waugh, D.S, Ji, X.
登録日2005-11-10
公開日2006-02-07
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural Insight into the Mechanism of Double-Stranded RNA Processing by Ribonuclease III.
Cell(Cambridge,Mass.), 124, 2006
7DEY
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Structure of Dicer from Pichia stipitis
分子名称: RNase III
著者Jobichen, C, Jingru, C.
登録日2020-11-05
公開日2021-05-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.897 Å)
主引用文献Structural and mechanistic insight into stem-loop RNA processing by yeast Pichia stipitis Dicer.
Protein Sci., 30, 2021
6TNN
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Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA
分子名称: 50S ribosomal protein L10, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
著者Oerum, S, Dendooven, T, Gilet, L, Catala, M, Degut, C, Trinquier, A, Barraud, P, Luisi, B, Condon, C, Tisne, C.
登録日2019-12-09
公開日2020-09-30
最終更新日2020-10-28
実験手法ELECTRON MICROSCOPY (3.07 Å)
主引用文献Structures of B. subtilis Maturation RNases Captured on 50S Ribosome with Pre-rRNAs.
Mol.Cell, 80, 2020

 

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