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4EBY
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BU of 4eby by Molmil
Crystal structure of the ectodomain of a receptor like kinase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitin elicitor receptor kinase 1, ...
Authors:Chai, J, Liu, T, Han, Z, She, J, Wang, J.
Deposit date:2012-03-25
Release date:2012-06-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Chitin-induced dimerization activates a plant immune receptor.
Science, 336, 2012
4UZ3
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BU of 4uz3 by Molmil
Crystal structure of the N-terminal LysM domains from the putative NlpC/P60 D,L endopeptidase from T. thermophilus bound to N-acetyl-chitohexaose
Descriptor: 1,4-DIETHYLENE DIOXIDE, 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, ...
Authors:Wong, J.E.M.M, Blaise, M.
Deposit date:2014-09-04
Release date:2015-01-14
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:An Intermolecular Binding Mechanism Involving Multiple Lysm Domains Mediates Carbohydrate Recognition by an Endopeptidase.
Acta Crystallogr.,Sect.D, 71, 2015
7R1L
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BU of 7r1l by Molmil
Clostridium thermocellum CtCBM50 structure in complex with beta-1,4-GlcNAc trisaccharide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Spore coat assembly protein SafA
Authors:Ribeiro, D.O, Costa, R, Palma, A.S, Carvalho, A.L.
Deposit date:2022-02-03
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Unravelling Clostridium thermocellum LysM domains: a molecular view on the cooperative recognition of chitin and peptidoglycan
To Be Published
6Q40
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BU of 6q40 by Molmil
A secreted LysM effector of the wheat pathogen Zymoseptoria tritici protects the fungal hyphae against chitinase hydrolysis through ligand-dependent polymerisation of LysM homodimers
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, LysM domain-containing protein
Authors:Mesters, J.R, Saleem-Batcha, R, Sanchez-Vallet, A, Thomma, B.P.H.J.
Deposit date:2018-12-05
Release date:2019-10-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.412 Å)
Cite:A secreted LysM effector protects fungal hyphae through chitin-dependent homodimer polymerization.
Plos Pathog., 16, 2020
1E0G
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BU of 1e0g by Molmil
LYSM Domain from E.coli MLTD
Descriptor: Membrane-bound lytic murein transglycosylase D
Authors:Bateman, A, Bycroft, M.
Deposit date:2000-03-27
Release date:2000-06-21
Last modified:2019-09-25
Method:SOLUTION NMR
Cite:The Structure of a Lysm Domain from E.Coli Membrane Bound Lytic Murein Transglycosylase D (Mltd)
J.Mol.Biol., 299, 2000
6XWE
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BU of 6xwe by Molmil
Crystal structure of LYK3 ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETONITRILE, LysM domain receptor-like kinase 3, ...
Authors:Gysel, K, Blaise, M, Andersen, K.R.
Deposit date:2020-01-23
Release date:2020-08-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Ligand-recognizing motifs in plant LysM receptors are major determinants of specificity.
Science, 369, 2020
2DJP
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BU of 2djp by Molmil
The solution structure of the LysM domain of human hypothetical protein SB145
Descriptor: Hypothetical protein SB145
Authors:Sasagawa, A, Tochio, N, Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-05
Release date:2006-10-05
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:The solution structure of the LysM domain of human hypothetical protein SB145
To be Published
4PXV
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BU of 4pxv by Molmil
Crystal Structure of LysM domain from pteris ryukyuensis chitinase A
Descriptor: Chitinase A, ZINC ION
Authors:Ohnuma, T, Umemoto, N, Numata, T, Fukamizo, T.
Deposit date:2014-03-25
Release date:2015-03-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of LysM domain from pteris ryukyuensis chitinase A
To be Published
4UZ2
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BU of 4uz2 by Molmil
Crystal structure of the N-terminal LysM domains from the putative NlpC/P60 D,L endopeptidase from T. thermophilus
Descriptor: CELL WALL-BINDING ENDOPEPTIDASE-RELATED PROTEIN
Authors:Wong, J.E.M.M, Blaise, M.
Deposit date:2014-09-04
Release date:2015-01-14
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:An Intermolecular Binding Mechanism Involving Multiple Lysm Domains Mediates Carbohydrate Recognition by an Endopeptidase.
Acta Crystallogr.,Sect.D, 71, 2015
5YLG
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BU of 5ylg by Molmil
Crystal Structure of LysM domain from pteris ryukyuensis chitinase A
Descriptor: 1,2-ETHANEDIOL, Chitinase A, ZINC ION
Authors:Ohnuma, T, Kitaoku, Y, Umemoto, N, Numata, T, Fukamizo, T.
Deposit date:2017-10-17
Release date:2018-10-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal Structure of LysM domain from pteris ryukyuensis chitinase A
To Be Published
5JCE
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BU of 5jce by Molmil
Crystal structure of OsCEBiP complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitin elicitor-binding protein
Authors:Chai, J.J, Liu, S.M, Wang, J.Z.
Deposit date:2016-04-15
Release date:2016-06-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Molecular Mechanism for Fungal Cell Wall Recognition by Rice Chitin Receptor OsCEBiP
Structure, 24, 2016
7BAX
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BU of 7bax by Molmil
Crystal structure of LYS11 ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, LysM type receptor kinase
Authors:Laursen, M, Cheng, J, Gysel, K, Blaise, M, Andersen, K.R.
Deposit date:2020-12-16
Release date:2021-11-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Kinetic proofreading of lipochitooligosaccharides determines signal activation of symbiotic plant receptors.
Proc.Natl.Acad.Sci.USA, 118, 2021
5YZ6
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BU of 5yz6 by Molmil
Solution structure of LysM domain from a chitinase derived from Volvox carteri
Descriptor: Chitinase, lysozyme
Authors:Kitaoku, Y, Nishimura, S, Fukamizo, T, Ohnuma, T.
Deposit date:2017-12-13
Release date:2018-12-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structures and chitin-binding properties of two N-terminal lysin motifs (LysMs) found in a chitinase from Volvox carteri.
Glycobiology, 29, 2019
5YZK
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BU of 5yzk by Molmil
Solution structure of LysM domain from a chitinase derived from Volvox carteri
Descriptor: Chitinase, lysozyme
Authors:Kitaoku, Y, Nishimura, S, Fukamizo, T, Ohnuma, T.
Deposit date:2017-12-15
Release date:2018-12-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structures and chitin-binding properties of two N-terminal lysin motifs (LysMs) found in a chitinase from Volvox carteri.
Glycobiology, 29, 2019
5JCD
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BU of 5jcd by Molmil
Crystal structure of OsCEBiP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Chitin elicitor-binding protein
Authors:Chai, J.J, Liu, S.M, Wang, J.Z.
Deposit date:2016-04-15
Release date:2017-02-22
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular Mechanism for Fungal Cell Wall Recognition by Rice Chitin Receptor OsCEBiP
Structure, 24, 2016
5K2L
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BU of 5k2l by Molmil
Crystal structure of LysM domain from Volvox carteri chitinase
Descriptor: 1,2-ETHANEDIOL, Chitinase, lysozyme
Authors:Kitaoku, Y, Numata, T, Fukamizo, T, Ohnuma, T.
Deposit date:2016-05-19
Release date:2017-02-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Chitin oligosaccharide binding to the lysin motif of a novel type of chitinase from the multicellular green alga, Volvox carteri.
Plant Mol. Biol., 93, 2017
5BUM
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BU of 5bum by Molmil
Crystal Structure of LysM domain from Equisetum arvense chitinase A
Descriptor: Chitinase A, SULFATE ION
Authors:Kitaoku, Y, Numata, T, Ohnuma, T, Taira, T, Fukamizo, T.
Deposit date:2015-06-04
Release date:2016-06-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure, mechanism, and phylogeny of LysM-chitinase conjugates specifically found in fern plants.
Plant Sci., 321, 2022
2MKX
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BU of 2mkx by Molmil
Solution structure of LysM the peptidoglycan binding domain of autolysin AtlA from Enterococcus faecalis
Descriptor: Autolysin
Authors:Baxter, N.J, Williamson, M.P.
Deposit date:2014-02-14
Release date:2014-06-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Molecular basis for bacterial peptidoglycan recognition by LysM domains.
Nat Commun, 5, 2014
2MPW
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BU of 2mpw by Molmil
Solution structure of the LysM region of the E. coli Intimin periplasmic domain
Descriptor: Intimin
Authors:Coles, M, Chaubey, M, Leo, J.C, Linke, D, Schuetz, M.C, Goetz, F, Autenrieth, I.B.
Deposit date:2014-06-05
Release date:2014-11-12
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Intimin periplasmic domain mediates dimerisation and binding to peptidoglycan.
Mol.Microbiol., 95, 2015
4B8V
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BU of 4b8v by Molmil
Cladosporium fulvum LysM effector Ecp6 in complex with a beta-1,4- linked N-acetyl-D-glucosamine tetramer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, ...
Authors:Saleem-Batcha, R, Sanchez-Vallet, A, Hansen, G, Thomma, B.P.H.J, Mesters, J.R.
Deposit date:2012-08-30
Release date:2013-07-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Fungal Effector Ecp6 Outcompetes Host Immune Receptor for Chitin Binding Through Intrachain Lysm Dimerization
Elife, 2, 2013
4B9H
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BU of 4b9h by Molmil
Cladosporium fulvum LysM effector Ecp6 in complex with a beta-1,4- linked N-acetyl-D-glucosamine tetramer: I3C heavy atom derivative
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, ...
Authors:Saleem-Batcha, R, Sanchez-Vallet, A, Hansen, G, Thomma, B.P.H.J, Mesters, J.R.
Deposit date:2012-09-04
Release date:2013-07-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Fungal Effector Ecp6 Outcompetes Host Immune Receptor for Chitin Binding Through Intrachain Lysm Dimerization
Elife, 2, 2013
4EBZ
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BU of 4ebz by Molmil
Crystal structure of the ectodomain of a receptor like kinase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitin elicitor receptor kinase 1, ...
Authors:Chai, J, Liu, T, Han, Z, She, J, Wang, J.
Deposit date:2012-03-26
Release date:2012-06-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.792 Å)
Cite:Chitin-induced dimerization activates a plant immune receptor.
Science, 336, 2012
1Y7M
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BU of 1y7m by Molmil
Crystal Structure of the B. subtilis YkuD protein at 2 A resolution
Descriptor: CADMIUM ION, SULFATE ION, hypothetical protein BSU14040
Authors:Bielnicki, J.A, Devedjiev, Y, Derewenda, U, Dauter, Z, Joachimiak, A, Derewenda, Z.S, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-12-09
Release date:2005-03-01
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:B. subtilis ykuD protein at 2.0 A resolution: insights into the structure and function of a novel, ubiquitous family of bacterial enzymes.
Proteins, 62, 2006
7PVC
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BU of 7pvc by Molmil
The structure of Kbp.K from E. coli with potassium bound.
Descriptor: POTASSIUM ION, Potassium binding protein Kbp
Authors:Smith, B.O.
Deposit date:2021-10-01
Release date:2021-10-13
Last modified:2023-10-11
Method:SOLUTION NMR
Cite:Tuning the Sensitivity of Genetically Encoded Fluorescent Potassium Indicators through Structure-Guided and Genome Mining Strategies.
ACS Sens, 7, 2022
2L9Y
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BU of 2l9y by Molmil
Solution structure of the MoCVNH-LysM module from the rice blast fungus Magnaporthe oryzae protein (MGG_03307)
Descriptor: CVNH-LysM lectin
Authors:Koharudin, L.M.I, Viscomi, A.R, Montanini, B, Kershaw, M.J, Talbot, N.J, Ottonello, S, Gronenborn, A.M.
Deposit date:2011-02-26
Release date:2011-03-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure-Function Analysis of a CVNH-LysM Lectin Expressed during Plant Infection by the Rice Blast Fungus Magnaporthe oryzae.
Structure, 19, 2011

 

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