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6G59

Structure of the alanine racemase from Staphylococcus aureus in complex with an pyridoxal-6- phosphate derivative

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005829cellular_componentcytosol
A0006522biological_processalanine metabolic process
A0008784molecular_functionalanine racemase activity
A0009252biological_processpeptidoglycan biosynthetic process
A0016853molecular_functionisomerase activity
A0030170molecular_functionpyridoxal phosphate binding
A0030632biological_processD-alanine biosynthetic process
B0003824molecular_functioncatalytic activity
B0005829cellular_componentcytosol
B0006522biological_processalanine metabolic process
B0008784molecular_functionalanine racemase activity
B0009252biological_processpeptidoglycan biosynthetic process
B0016853molecular_functionisomerase activity
B0030170molecular_functionpyridoxal phosphate binding
B0030632biological_processD-alanine biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues10
Detailsbinding site for residue EM2 A 401
ChainResidue
ALYS39
AHOH525
ATYR43
AHIS168
AASN203
ASER204
AARG219
AGLY221
AILE222
ATYR354

site_idAC2
Number of Residues9
Detailsbinding site for residue SO4 A 402
ChainResidue
AALA-1
AGLY0
APHE1
ASER2
ALYS4
AASP143
ATHR144
AARG185
AHOH552

site_idAC3
Number of Residues3
Detailsbinding site for residue SO4 A 403
ChainResidue
ALYS49
AARG52
AHIS76

site_idAC4
Number of Residues4
Detailsbinding site for residue SO4 A 404
ChainResidue
AHIS240
APRO243
AHIS335
AARG336

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 A 405
ChainResidue
AARG290
AILE291
AGLN293
AARG309

site_idAC6
Number of Residues3
Detailsbinding site for residue NA A 406
ChainResidue
AILE154
ATYR157
ALEU160

site_idAC7
Number of Residues6
Detailsbinding site for residue NA A 407
ChainResidue
ATYR227
AVAL245
AASP333
AASN334
AVAL342
AHOH574

site_idAC8
Number of Residues5
Detailsbinding site for residue NA A 408
ChainResidue
ASER262
ASER264
BGLY135
BMET136
BALA170

site_idAC9
Number of Residues3
Detailsbinding site for residue CL A 409
ChainResidue
AHIS29
APRO30
AASN31

site_idAD1
Number of Residues5
Detailsbinding site for residue SO4 B 402
ChainResidue
BHIS240
BPRO243
BHIS335
BARG336
BHOH542

site_idAD2
Number of Residues4
Detailsbinding site for residue SO4 B 403
ChainResidue
BTYR5
BTYR10
BILE367
BARG374

site_idAD3
Number of Residues4
Detailsbinding site for residue NA B 404
ChainResidue
BILE154
BTYR157
BLEU160
BHOH547

site_idAD4
Number of Residues3
Detailsbinding site for residue CL B 405
ChainResidue
BHIS29
BASN31
BLYS32

site_idAD5
Number of Residues18
Detailsbinding site for Di-peptide EM2 B 401 and LYS B 39
ChainResidue
AASP313
BVAL37
BVAL38
BALA40
BASN41
BALA42
BTYR43
BALA63
BALA65
BGLU69
BHIS168
BASN203
BSER204
BARG219
BGLY221
BILE222
BTYR354
BHOH536

Functional Information from PROSITE/UniProt
site_idPS00395
Number of Residues11
DetailsALANINE_RACEMASE Alanine racemase pyridoxal-phosphate attachment site. AVvKANAYGLG
ChainResidueDetails
AALA36-GLY46

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor; specific for D-alanine => ECO:0000305|PubMed:22194336
ChainResidueDetails
ALYS39
BLYS39

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton acceptor; specific for L-alanine => ECO:0000305|PubMed:22194336
ChainResidueDetails
ATYR265
BTYR265

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01201
ChainResidueDetails
AARG138
BARG138

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305
ChainResidueDetails
AMET312
BMET312

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine
ChainResidueDetails
ALYS39
BLYS39

217705

PDB entries from 2024-03-27

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