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6FKO

Deoxyguanylosuccinate synthase (DgsS) quaternary structure with ATP, dGMP, hadacidin at 2.1 Angstrom resolution

Replaces:  6FJR
Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0000287molecular_functionmagnesium ion binding
A0004019molecular_functionadenylosuccinate synthase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006164biological_processpurine nucleotide biosynthetic process
A0016874molecular_functionligase activity
A0044208biological_process'de novo' AMP biosynthetic process
A0046040biological_processIMP metabolic process
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0000287molecular_functionmagnesium ion binding
B0004019molecular_functionadenylosuccinate synthase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006164biological_processpurine nucleotide biosynthetic process
B0016874molecular_functionligase activity
B0044208biological_process'de novo' AMP biosynthetic process
B0046040biological_processIMP metabolic process
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue HDA A 401
ChainResidue
AALA41
ATHR262
ATHR263
AVAL264
AARG269
AHOH536

site_idAC2
Number of Residues20
Detailsbinding site for residue DGP A 402
ChainResidue
AGLY126
ASER127
ATHR128
AGLN187
ALEU191
ACYS201
ATHR202
AVAL236
AATP404
AHOH506
AHOH525
AHOH526
AHOH541
AHOH550
AHOH573
AHOH640
BARG142
ASER14
AASN40
AALA41

site_idAC3
Number of Residues9
Detailsbinding site for residue FLC A 403
ChainResidue
ALEU24
ALYS27
AASN28
AARG180
ALYS224
AGLU290
ALYS325
ATYR326
AHOH565

site_idAC4
Number of Residues22
Detailsbinding site for residue ATP A 404
ChainResidue
ASER14
ATHR15
AGLY16
ALYS17
AGLY18
AALA41
AGLY42
AHIS43
ATHR44
AGLN187
AASN294
APHE295
AASN297
AGLY330
APRO331
ADGP402
AHOH501
AHOH523
AHOH547
AHOH618
AHOH649
AHOH676

site_idAC5
Number of Residues20
Detailsbinding site for residue DGP B 401
ChainResidue
AARG142
BPHE12
BSER14
BASN40
BALA41
BGLY126
BSER127
BTHR128
BGLN187
BLEU191
BCYS201
BTHR202
BVAL236
BATP402
BHOH514
BHOH525
BHOH534
BHOH554
BHOH580
BHOH624

site_idAC6
Number of Residues18
Detailsbinding site for residue ATP B 402
ChainResidue
BGLY13
BSER14
BTHR15
BGLY16
BLYS17
BGLY18
BALA41
BGLY42
BHIS43
BTHR44
BGLN187
BASN294
BPHE295
BASN297
BGLY330
BPRO331
BDGP401
BHOH527

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_04166, ECO:0000305|PubMed:33926954
ChainResidueDetails
BSER14
ASER14

site_idSWS_FT_FI2
Number of Residues36
DetailsBINDING: BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
ChainResidueDetails
AGLY16
ALYS17
AGLY18
AASN40
AGLY42
AHIS43
ATHR44
ASER127
ATHR128
AARG142
AGLN187
ATHR202
ATHR263
AASN294
AASN297
AGLY330
BSER14
BTHR15
BGLY16
BLYS17
BGLY18
BASN40
BGLY42
BHIS43
BTHR44
BSER127
BTHR128
BARG142
BGLN187
BTHR202
BTHR263
BASN294
BASN297
BGLY330
ASER14
ATHR15

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6TNH
ChainResidueDetails
BVAL264
BARG269
AVAL264
AARG269

218500

数据于2024-04-17公开中

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