Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6D8P

Ternary RsAgo Complex Containing Guide RNA Paired with Target DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003723molecular_functionRNA binding
A0004520molecular_functionDNA endonuclease activity
A0044355biological_processclearance of foreign intracellular DNA
A0046872molecular_functionmetal ion binding
B0003676molecular_functionnucleic acid binding
B0003677molecular_functionDNA binding
B0003723molecular_functionRNA binding
B0004520molecular_functionDNA endonuclease activity
B0044355biological_processclearance of foreign intracellular DNA
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue MG A 801
ChainResidue
ALEU108
APRO109
ALYS110

site_idAC2
Number of Residues3
Detailsbinding site for residue MG A 804
ChainResidue
ASER395
ALYS396
AHOH1040

site_idAC3
Number of Residues3
Detailsbinding site for residue MG A 805
ChainResidue
AGLU451
AMET482
AHOH1116

site_idAC4
Number of Residues3
Detailsbinding site for residue ACT A 807
ChainResidue
ATHR173
AHIS641
APRO642

site_idAC5
Number of Residues2
Detailsbinding site for residue ACT A 808
ChainResidue
ALYS396
AHOH1005

site_idAC6
Number of Residues2
Detailsbinding site for residue ACT A 809
ChainResidue
AMET528
AHOH1148

site_idAC7
Number of Residues5
Detailsbinding site for residue ACT A 810
ChainResidue
AHIS516
ATYR557
ATYR717
AGLN721
ALYS724

site_idAC8
Number of Residues2
Detailsbinding site for residue ACT A 811
ChainResidue
ATRP761
AHOH908

site_idAC9
Number of Residues2
Detailsbinding site for residue ACT A 812
ChainResidue
AALA113
AVAL114

site_idAD1
Number of Residues1
Detailsbinding site for residue ACT A 813
ChainResidue
ASER578

site_idAD2
Number of Residues8
Detailsbinding site for residue ACT A 814
ChainResidue
ATYR494
AGLN497
AASN498
ATHR733
AHOH901
EHOH225
JDA3
JDA4

site_idAD3
Number of Residues2
Detailsbinding site for residue ACT A 815
ChainResidue
AARG455
AHOH1117

site_idAD4
Number of Residues3
Detailsbinding site for residue ACT A 816
ChainResidue
AARG319
AARG322
AASP716

site_idAD5
Number of Residues2
Detailsbinding site for residue CAC A 818
ChainResidue
AGLN21
ALEU22

site_idAD6
Number of Residues2
Detailsbinding site for residue CAC A 819
ChainResidue
ATYR111
APHE290

site_idAD7
Number of Residues2
Detailsbinding site for residue CAC A 820
ChainResidue
AARG384
APHE409

site_idAD8
Number of Residues5
Detailsbinding site for residue MG E 101
ChainResidue
ALEU777
AHOH973
EU1
EA3
EHOH208

site_idAD9
Number of Residues3
Detailsbinding site for residue ACT E 102
ChainResidue
EU5
EG6
EHOH213

site_idAE1
Number of Residues2
Detailsbinding site for residue ACT E 103
ChainResidue
EC7
EHOH227

site_idAE2
Number of Residues3
Detailsbinding site for residue ACT J 101
ChainResidue
JDC-12
JDG-11
JDT-10

site_idAE3
Number of Residues2
Detailsbinding site for residue ACT B 801
ChainResidue
BARG20
BHOH999

site_idAE4
Number of Residues2
Detailsbinding site for residue ACT B 802
ChainResidue
BARG384
BVAL407

site_idAE5
Number of Residues2
Detailsbinding site for residue ACT B 803
ChainResidue
BTYR571
BARG606

site_idAE6
Number of Residues7
Detailsbinding site for residue ACT B 804
ChainResidue
BHIS639
BVAL685
BTHR700
BLEU702
BALA737
BHOH966
CHOH215

site_idAE7
Number of Residues3
Detailsbinding site for residue CAC B 805
ChainResidue
BGLU377
BARG384
BPHE409

site_idAE8
Number of Residues5
Detailsbinding site for residue MG C 101
ChainResidue
BLEU777
BHOH972
CU1
CA3
CHOH203

site_idAE9
Number of Residues4
Detailsbinding site for residue MPD C 102
ChainResidue
BLYS115
CG11
CG12
GDC-7

site_idAF1
Number of Residues3
Detailsbinding site for residue ACT G 101
ChainResidue
BGLU746
GDT-5
GDG-4

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:27325485, ECO:0000269|PubMed:29996105, ECO:0000312|PDB:5AWH, ECO:0000312|PDB:6D8P
ChainResidueDetails
ALEU777
BLEU777

217705

數據於2024-03-27公開中

PDB statisticsPDBj update infoContact PDBjnumon