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5TZS

Architecture of the yeast small subunit processome

Functional Information from GO Data
ChainGOidnamespacecontents
30000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
30003735molecular_functionstructural constituent of ribosome
30005634cellular_componentnucleus
30005654cellular_componentnucleoplasm
30005730cellular_componentnucleolus
30005737cellular_componentcytoplasm
30005829cellular_componentcytosol
30005840cellular_componentribosome
30006364biological_processrRNA processing
30006412biological_processtranslation
30022627cellular_componentcytosolic small ribosomal subunit
30030686cellular_component90S preribosome
30032040cellular_componentsmall-subunit processome
30042254biological_processribosome biogenesis
31990904cellular_componentribonucleoprotein complex
50002181biological_processcytoplasmic translation
50003723molecular_functionRNA binding
50003735molecular_functionstructural constituent of ribosome
50005737cellular_componentcytoplasm
50005829cellular_componentcytosol
50005840cellular_componentribosome
50006412biological_processtranslation
50019843molecular_functionrRNA binding
50022627cellular_componentcytosolic small ribosomal subunit
50030686cellular_component90S preribosome
50032991cellular_componentprotein-containing complex
50043229cellular_componentintracellular organelle
51990904cellular_componentribonucleoprotein complex
60000028biological_processribosomal small subunit assembly
60000054biological_processribosomal subunit export from nucleus
60002181biological_processcytoplasmic translation
60003723molecular_functionRNA binding
60003729molecular_functionmRNA binding
60003735molecular_functionstructural constituent of ribosome
60005515molecular_functionprotein binding
60005737cellular_componentcytoplasm
60005829cellular_componentcytosol
60005840cellular_componentribosome
60006412biological_processtranslation
60006450biological_processregulation of translational fidelity
60015935cellular_componentsmall ribosomal subunit
60019843molecular_functionrRNA binding
60022627cellular_componentcytosolic small ribosomal subunit
60030686cellular_component90S preribosome
61990904cellular_componentribonucleoprotein complex
70002181biological_processcytoplasmic translation
70003735molecular_functionstructural constituent of ribosome
70005634cellular_componentnucleus
70005654cellular_componentnucleoplasm
70005730cellular_componentnucleolus
70005737cellular_componentcytoplasm
70005829cellular_componentcytosol
70005840cellular_componentribosome
70006364biological_processrRNA processing
70006412biological_processtranslation
70022627cellular_componentcytosolic small ribosomal subunit
70030686cellular_component90S preribosome
70032040cellular_componentsmall-subunit processome
70042254biological_processribosome biogenesis
70042274biological_processribosomal small subunit biogenesis
71990904cellular_componentribonucleoprotein complex
80000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
80003735molecular_functionstructural constituent of ribosome
80005737cellular_componentcytoplasm
80005829cellular_componentcytosol
80005840cellular_componentribosome
80006412biological_processtranslation
80022627cellular_componentcytosolic small ribosomal subunit
80030686cellular_component90S preribosome
81990904cellular_componentribonucleoprotein complex
90000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
90003723molecular_functionRNA binding
90003735molecular_functionstructural constituent of ribosome
90005634cellular_componentnucleus
90005654cellular_componentnucleoplasm
90005730cellular_componentnucleolus
90005737cellular_componentcytoplasm
90005829cellular_componentcytosol
90005840cellular_componentribosome
90006364biological_processrRNA processing
90006412biological_processtranslation
90015935cellular_componentsmall ribosomal subunit
90019843molecular_functionrRNA binding
90022627cellular_componentcytosolic small ribosomal subunit
90030686cellular_component90S preribosome
90032040cellular_componentsmall-subunit processome
90042254biological_processribosome biogenesis
90042274biological_processribosomal small subunit biogenesis
90043226cellular_componentorganelle
91990904cellular_componentribonucleoprotein complex
C0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
C0003723molecular_functionRNA binding
C0003735molecular_functionstructural constituent of ribosome
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0005840cellular_componentribosome
C0006412biological_processtranslation
C0022627cellular_componentcytosolic small ribosomal subunit
C0030686cellular_component90S preribosome
C1990904cellular_componentribonucleoprotein complex
D0000028biological_processribosomal small subunit assembly
D0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
D0003723molecular_functionRNA binding
D0003735molecular_functionstructural constituent of ribosome
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0005840cellular_componentribosome
D0006412biological_processtranslation
D0019843molecular_functionrRNA binding
D0022627cellular_componentcytosolic small ribosomal subunit
D0030686cellular_component90S preribosome
D1990904cellular_componentribonucleoprotein complex
E0002181biological_processcytoplasmic translation
E0003735molecular_functionstructural constituent of ribosome
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0005840cellular_componentribosome
E0006412biological_processtranslation
E0022627cellular_componentcytosolic small ribosomal subunit
E1990904cellular_componentribonucleoprotein complex
F0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
F0002181biological_processcytoplasmic translation
F0003735molecular_functionstructural constituent of ribosome
F0005737cellular_componentcytoplasm
F0005739cellular_componentmitochondrion
F0005829cellular_componentcytosol
F0005840cellular_componentribosome
F0006412biological_processtranslation
F0022627cellular_componentcytosolic small ribosomal subunit
F1990904cellular_componentribonucleoprotein complex
G0000028biological_processribosomal small subunit assembly
G0000054biological_processribosomal subunit export from nucleus
G0003735molecular_functionstructural constituent of ribosome
G0005737cellular_componentcytoplasm
G0005829cellular_componentcytosol
G0005840cellular_componentribosome
G0006412biological_processtranslation
G0022627cellular_componentcytosolic small ribosomal subunit
G0030490biological_processmaturation of SSU-rRNA
G1900153biological_processpositive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
G1990904cellular_componentribonucleoprotein complex
e0000245biological_processspliceosomal complex assembly
e0000398biological_processmRNA splicing, via spliceosome
e0000452biological_processsnoRNA guided rRNA 2'-O-methylation
e0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
e0000470biological_processmaturation of LSU-rRNA
e0000494biological_processbox C/D sno(s)RNA 3'-end processing
e0003723molecular_functionRNA binding
e0005515molecular_functionprotein binding
e0005634cellular_componentnucleus
e0005654cellular_componentnucleoplasm
e0005681cellular_componentspliceosomal complex
e0005687cellular_componentU4 snRNP
e0005730cellular_componentnucleolus
e0006364biological_processrRNA processing
e0006397biological_processmRNA processing
e0008380biological_processRNA splicing
e0022625cellular_componentcytosolic large ribosomal subunit
e0030490biological_processmaturation of SSU-rRNA
e0030621molecular_functionU4 snRNA binding
e0031428cellular_componentbox C/D methylation guide snoRNP complex
e0032040cellular_componentsmall-subunit processome
e0034511molecular_functionU3 snoRNA binding
e0042254biological_processribosome biogenesis
e0043232cellular_componentintracellular non-membrane-bounded organelle
e0046540cellular_componentU4/U6 x U5 tri-snRNP complex
e0071001cellular_componentU4/U6 snRNP
e0071011cellular_componentprecatalytic spliceosome
e1905216biological_processpositive regulation of RNA binding
e1990904cellular_componentribonucleoprotein complex
f0000245biological_processspliceosomal complex assembly
f0000398biological_processmRNA splicing, via spliceosome
f0000452biological_processsnoRNA guided rRNA 2'-O-methylation
f0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
f0000470biological_processmaturation of LSU-rRNA
f0000494biological_processbox C/D sno(s)RNA 3'-end processing
f0003723molecular_functionRNA binding
f0005515molecular_functionprotein binding
f0005634cellular_componentnucleus
f0005654cellular_componentnucleoplasm
f0005681cellular_componentspliceosomal complex
f0005687cellular_componentU4 snRNP
f0005730cellular_componentnucleolus
f0006364biological_processrRNA processing
f0006397biological_processmRNA processing
f0008380biological_processRNA splicing
f0022625cellular_componentcytosolic large ribosomal subunit
f0030490biological_processmaturation of SSU-rRNA
f0030621molecular_functionU4 snRNA binding
f0031428cellular_componentbox C/D methylation guide snoRNP complex
f0032040cellular_componentsmall-subunit processome
f0034511molecular_functionU3 snoRNA binding
f0042254biological_processribosome biogenesis
f0043232cellular_componentintracellular non-membrane-bounded organelle
f0046540cellular_componentU4/U6 x U5 tri-snRNP complex
f0071001cellular_componentU4/U6 snRNP
f0071011cellular_componentprecatalytic spliceosome
f1905216biological_processpositive regulation of RNA binding
f1990904cellular_componentribonucleoprotein complex
g0000447biological_processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
g0000472biological_processendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
g0000480biological_processendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
g0005515molecular_functionprotein binding
g0005634cellular_componentnucleus
g0005654cellular_componentnucleoplasm
g0005730cellular_componentnucleolus
g0006364biological_processrRNA processing
g0030490biological_processmaturation of SSU-rRNA
g0030515molecular_functionsnoRNA binding
g0030686cellular_component90S preribosome
g0031428cellular_componentbox C/D methylation guide snoRNP complex
g0032040cellular_componentsmall-subunit processome
g0034511molecular_functionU3 snoRNA binding
g0042254biological_processribosome biogenesis
g1990904cellular_componentribonucleoprotein complex
h0000447biological_processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
h0000472biological_processendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
h0000479biological_processendonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
h0000480biological_processendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
h0003824molecular_functioncatalytic activity
h0003963molecular_functionRNA-3'-phosphate cyclase activity
h0004521molecular_functionRNA endonuclease activity
h0005515molecular_functionprotein binding
h0005634cellular_componentnucleus
h0005654cellular_componentnucleoplasm
h0005730cellular_componentnucleolus
h0006364biological_processrRNA processing
h0006396biological_processRNA processing
h0008047molecular_functionenzyme activator activity
h0030490biological_processmaturation of SSU-rRNA
h0030686cellular_component90S preribosome
h0032040cellular_componentsmall-subunit processome
h0042254biological_processribosome biogenesis
h0042274biological_processribosomal small subunit biogenesis
h2000232biological_processregulation of rRNA processing
j0000447biological_processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
j0000472biological_processendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
j0000480biological_processendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
j0003723molecular_functionRNA binding
j0005515molecular_functionprotein binding
j0005634cellular_componentnucleus
j0005654cellular_componentnucleoplasm
j0005730cellular_componentnucleolus
j0005737cellular_componentcytoplasm
j0005880cellular_componentnuclear microtubule
j0006364biological_processrRNA processing
j0008168molecular_functionmethyltransferase activity
j0016740molecular_functiontransferase activity
j0019843molecular_functionrRNA binding
j0030490biological_processmaturation of SSU-rRNA
j0030686cellular_component90S preribosome
j0031167biological_processrRNA methylation
j0032040cellular_componentsmall-subunit processome
j0032259biological_processmethylation
j0034399cellular_componentnuclear periphery
j0042254biological_processribosome biogenesis
j0042274biological_processribosomal small subunit biogenesis
j0042802molecular_functionidentical protein binding
j0070037molecular_functionrRNA (pseudouridine) methyltransferase activity
j0070475biological_processrRNA base methylation
j1990904cellular_componentribonucleoprotein complex
k0000447biological_processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
k0000472biological_processendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
k0000480biological_processendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
k0003723molecular_functionRNA binding
k0005515molecular_functionprotein binding
k0005634cellular_componentnucleus
k0005654cellular_componentnucleoplasm
k0005730cellular_componentnucleolus
k0005737cellular_componentcytoplasm
k0005880cellular_componentnuclear microtubule
k0006364biological_processrRNA processing
k0008168molecular_functionmethyltransferase activity
k0016740molecular_functiontransferase activity
k0019843molecular_functionrRNA binding
k0030490biological_processmaturation of SSU-rRNA
k0030686cellular_component90S preribosome
k0031167biological_processrRNA methylation
k0032040cellular_componentsmall-subunit processome
k0032259biological_processmethylation
k0034399cellular_componentnuclear periphery
k0042254biological_processribosome biogenesis
k0042274biological_processribosomal small subunit biogenesis
k0042802molecular_functionidentical protein binding
k0070037molecular_functionrRNA (pseudouridine) methyltransferase activity
k0070475biological_processrRNA base methylation
k1990904cellular_componentribonucleoprotein complex
r0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
r0003735molecular_functionstructural constituent of ribosome
r0005737cellular_componentcytoplasm
r0005829cellular_componentcytosol
r0005840cellular_componentribosome
r0006412biological_processtranslation
r0006450biological_processregulation of translational fidelity
r0015935cellular_componentsmall ribosomal subunit
r0022627cellular_componentcytosolic small ribosomal subunit
r1990145biological_processmaintenance of translational fidelity
r1990904cellular_componentribonucleoprotein complex
Functional Information from PROSITE/UniProt
site_idPS01082
Number of Residues18
DetailsRIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CedknVPYvfVpSRvaLG
ChainResidueDetails
eCYS71-GLY88

site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDiVtVgQcRPIS
ChainResidueDetails
DGLY120-SER132

site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GyvILTTSaGIMdheeAR
ChainResidueDetails
EGLY100-ARG117

site_idPS01287
Number of Residues11
DetailsRTC RNA 3'-terminal phosphate cyclase signature. RGspPlGGGeV
ChainResidueDetails
hARG156-VAL166

site_idPS00529
Number of Residues23
DetailsRIBOSOMAL_S24E Ribosomal protein S24e signature. FGggKSvGFGlVYNSvaeakkfE
ChainResidueDetails
FPHE64-GLU86

site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. IVSAslDsTIRTWDL
ChainResidueDetails
TILE600-LEU614

site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGhvSQvyAirqAiAKGL
ChainResidueDetails
CGLY71-LEU89

site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR
ChainResidueDetails
rLYS62-ARG69

site_idPS00578
Number of Residues12
DetailsRIBOSOMAL_S6E Ribosomal protein S6e signature. ISGGnDkqGfPM
ChainResidueDetails
3ILE52-MET63

site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtqVYKlglAkSvhhARvLI
ChainResidueDetails
9LEU105-ILE129

site_idPS00961
Number of Residues9
DetailsRIBOSOMAL_S28E Ribosomal protein S28e signature. ESEREARrL
ChainResidueDetails
GGLU58-LEU66

site_idPS00528
Number of Residues15
DetailsRIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRLAaPhhWlLdK
ChainResidueDetails
5HIS8-LYS22

site_idPS01193
Number of Residues20
DetailsRIBOSOMAL_S8E Ribosomal protein S8e signature. RsaTGAkraqf.RkKrKfELG
ChainResidueDetails
8ARG11-GLY30

site_idPS00948
Number of Residues14
DetailsRIBOSOMAL_S7E Ribosomal protein S7e signature. KLtRELEKKFQdRH
ChainResidueDetails
7LYS76-HIS89

site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. ErLtnsLMmngrnnGKKlkavrIIkhT
ChainResidueDetails
6GLU91-THR117

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: 3,4-dihydroxyproline => ECO:0000269|PubMed:24550462
ChainResidueDetails
rPRO64
jGLY207
jGLY212
jLEU227
kLEU180
kGLY207
kGLY212
kLEU227

site_idSWS_FT_FI2
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047
ChainResidueDetails
rLYS56
DLYS141
DLYS148
jARG129
jARG132
jARG136
kARG88
kARG129
kARG132
kARG136
DLYS133

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Stabilizes Arg-88 => ECO:0000303|PubMed:21087996
ChainResidueDetails
jASP90
kASP90
6LYS203

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:17287358
ChainResidueDetails
CTHR70
8SER154
8SER155
8SER161
5LYS168
5LYS174
5LYS179
5LYS211
5LYS233

site_idSWS_FT_FI5
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047
ChainResidueDetails
CLYS30
CLYS47
CLYS59

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18407956
ChainResidueDetails
8SER158

218853

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