5NKM
SMG8-SMG9 complex
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000184 | biological_process | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
B | 0000184 | biological_process | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
C | 0000184 | biological_process | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
D | 0000184 | biological_process | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
E | 0000184 | biological_process | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
F | 0000184 | biological_process | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | binding site for residue EDO A 501 |
Chain | Residue |
A | ILE232 |
A | ASP233 |
A | SER238 |
A | CYS240 |
A | GLN241 |
A | LEU242 |
site_id | AC2 |
Number of Residues | 3 |
Details | binding site for residue EDO A 502 |
Chain | Residue |
A | LEU228 |
B | ASP172 |
B | ASP173 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue EDO C 501 |
Chain | Residue |
C | GLU106 |
C | GLU135 |
C | PHE139 |
C | LYS142 |
site_id | AC4 |
Number of Residues | 7 |
Details | binding site for residue EDO C 502 |
Chain | Residue |
B | HOH401 |
C | LYS21 |
C | VAL166 |
C | GLU305 |
C | ILE306 |
C | SER307 |
C | ASN310 |
site_id | AC5 |
Number of Residues | 3 |
Details | binding site for residue TRS C 503 |
Chain | Residue |
C | ASP31 |
C | ASP81 |
D | TYR202 |
site_id | AC6 |
Number of Residues | 2 |
Details | binding site for residue PEG C 504 |
Chain | Residue |
C | TYR44 |
C | ASP70 |
site_id | AC7 |
Number of Residues | 5 |
Details | binding site for residue PEG C 505 |
Chain | Residue |
C | LYS141 |
C | ASN144 |
C | ILE148 |
C | ASP230 |
C | SER237 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue EDO D 401 |
Chain | Residue |
C | ILE342 |
C | GLN343 |
C | HIS346 |
C | VAL398 |
C | GLY400 |
D | GLN215 |
site_id | AC9 |
Number of Residues | 5 |
Details | binding site for residue EDO D 402 |
Chain | Residue |
D | ALA185 |
D | LEU188 |
D | TYR189 |
D | GLU214 |
D | ARG217 |
site_id | AD1 |
Number of Residues | 4 |
Details | binding site for residue EDO E 501 |
Chain | Residue |
E | LYS23 |
E | ASP70 |
E | GLU296 |
E | PHE299 |
site_id | AD2 |
Number of Residues | 1 |
Details | binding site for residue EDO E 502 |
Chain | Residue |
E | ALA160 |
site_id | AD3 |
Number of Residues | 4 |
Details | binding site for residue EDO E 503 |
Chain | Residue |
E | ARG171 |
E | LEU173 |
E | VAL184 |
E | GLN241 |
site_id | AD4 |
Number of Residues | 5 |
Details | binding site for residue EDO E 504 |
Chain | Residue |
E | GLU177 |
E | VAL184 |
E | GLY235 |
E | SER238 |
E | GLN241 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue EDO E 505 |
Chain | Residue |
E | GLU305 |
E | ILE306 |
E | SER307 |
E | ASN310 |
site_id | AD6 |
Number of Residues | 5 |
Details | binding site for residue TRS E 506 |
Chain | Residue |
E | LYS30 |
E | ASP31 |
E | ASP81 |
F | TYR202 |
F | HOH403 |