3O0E
Crystal structure of OmpF in complex with colicin peptide OBS1
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0001530 | molecular_function | lipopolysaccharide binding |
| A | 0005216 | molecular_function | monoatomic ion channel activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0006811 | biological_process | monoatomic ion transport |
| A | 0008289 | molecular_function | lipid binding |
| A | 0009279 | cellular_component | cell outer membrane |
| A | 0015031 | biological_process | protein transport |
| A | 0015288 | molecular_function | porin activity |
| A | 0016020 | cellular_component | membrane |
| A | 0034220 | biological_process | monoatomic ion transmembrane transport |
| A | 0034702 | cellular_component | monoatomic ion channel complex |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0042912 | molecular_function | colicin transmembrane transporter activity |
| A | 0043213 | biological_process | bacteriocin transport |
| A | 0046930 | cellular_component | pore complex |
| A | 0070207 | biological_process | protein homotrimerization |
| A | 0097718 | molecular_function | disordered domain specific binding |
| B | 0001530 | molecular_function | lipopolysaccharide binding |
| B | 0005216 | molecular_function | monoatomic ion channel activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0006811 | biological_process | monoatomic ion transport |
| B | 0008289 | molecular_function | lipid binding |
| B | 0009279 | cellular_component | cell outer membrane |
| B | 0015031 | biological_process | protein transport |
| B | 0015288 | molecular_function | porin activity |
| B | 0016020 | cellular_component | membrane |
| B | 0034220 | biological_process | monoatomic ion transmembrane transport |
| B | 0034702 | cellular_component | monoatomic ion channel complex |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0042912 | molecular_function | colicin transmembrane transporter activity |
| B | 0043213 | biological_process | bacteriocin transport |
| B | 0046930 | cellular_component | pore complex |
| B | 0070207 | biological_process | protein homotrimerization |
| B | 0097718 | molecular_function | disordered domain specific binding |
| C | 0001530 | molecular_function | lipopolysaccharide binding |
| C | 0005216 | molecular_function | monoatomic ion channel activity |
| C | 0005515 | molecular_function | protein binding |
| C | 0006811 | biological_process | monoatomic ion transport |
| C | 0008289 | molecular_function | lipid binding |
| C | 0009279 | cellular_component | cell outer membrane |
| C | 0015031 | biological_process | protein transport |
| C | 0015288 | molecular_function | porin activity |
| C | 0016020 | cellular_component | membrane |
| C | 0034220 | biological_process | monoatomic ion transmembrane transport |
| C | 0034702 | cellular_component | monoatomic ion channel complex |
| C | 0042802 | molecular_function | identical protein binding |
| C | 0042912 | molecular_function | colicin transmembrane transporter activity |
| C | 0043213 | biological_process | bacteriocin transport |
| C | 0046930 | cellular_component | pore complex |
| C | 0070207 | biological_process | protein homotrimerization |
| C | 0097718 | molecular_function | disordered domain specific binding |
| D | 0001530 | molecular_function | lipopolysaccharide binding |
| D | 0005216 | molecular_function | monoatomic ion channel activity |
| D | 0005515 | molecular_function | protein binding |
| D | 0006811 | biological_process | monoatomic ion transport |
| D | 0008289 | molecular_function | lipid binding |
| D | 0009279 | cellular_component | cell outer membrane |
| D | 0015031 | biological_process | protein transport |
| D | 0015288 | molecular_function | porin activity |
| D | 0016020 | cellular_component | membrane |
| D | 0034220 | biological_process | monoatomic ion transmembrane transport |
| D | 0034702 | cellular_component | monoatomic ion channel complex |
| D | 0042802 | molecular_function | identical protein binding |
| D | 0042912 | molecular_function | colicin transmembrane transporter activity |
| D | 0043213 | biological_process | bacteriocin transport |
| D | 0046930 | cellular_component | pore complex |
| D | 0070207 | biological_process | protein homotrimerization |
| D | 0097718 | molecular_function | disordered domain specific binding |
| E | 0001530 | molecular_function | lipopolysaccharide binding |
| E | 0005216 | molecular_function | monoatomic ion channel activity |
| E | 0005515 | molecular_function | protein binding |
| E | 0006811 | biological_process | monoatomic ion transport |
| E | 0008289 | molecular_function | lipid binding |
| E | 0009279 | cellular_component | cell outer membrane |
| E | 0015031 | biological_process | protein transport |
| E | 0015288 | molecular_function | porin activity |
| E | 0016020 | cellular_component | membrane |
| E | 0034220 | biological_process | monoatomic ion transmembrane transport |
| E | 0034702 | cellular_component | monoatomic ion channel complex |
| E | 0042802 | molecular_function | identical protein binding |
| E | 0042912 | molecular_function | colicin transmembrane transporter activity |
| E | 0043213 | biological_process | bacteriocin transport |
| E | 0046930 | cellular_component | pore complex |
| E | 0070207 | biological_process | protein homotrimerization |
| E | 0097718 | molecular_function | disordered domain specific binding |
| F | 0001530 | molecular_function | lipopolysaccharide binding |
| F | 0005216 | molecular_function | monoatomic ion channel activity |
| F | 0005515 | molecular_function | protein binding |
| F | 0006811 | biological_process | monoatomic ion transport |
| F | 0008289 | molecular_function | lipid binding |
| F | 0009279 | cellular_component | cell outer membrane |
| F | 0015031 | biological_process | protein transport |
| F | 0015288 | molecular_function | porin activity |
| F | 0016020 | cellular_component | membrane |
| F | 0034220 | biological_process | monoatomic ion transmembrane transport |
| F | 0034702 | cellular_component | monoatomic ion channel complex |
| F | 0042802 | molecular_function | identical protein binding |
| F | 0042912 | molecular_function | colicin transmembrane transporter activity |
| F | 0043213 | biological_process | bacteriocin transport |
| F | 0046930 | cellular_component | pore complex |
| F | 0070207 | biological_process | protein homotrimerization |
| F | 0097718 | molecular_function | disordered domain specific binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 7 |
| Details | binding site for residue BOG B 401 |
| Chain | Residue |
| B | TYR98 |
| B | TYR157 |
| B | LYS160 |
| B | ASP172 |
| F | HIS21 |
| F | PHE23 |
| F | VAL334 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | binding site for residue BOG C 401 |
| Chain | Residue |
| A | LYS160 |
| A | ASP172 |
| C | HIS21 |
| C | GLY36 |
| C | VAL334 |
| A | TYR98 |
| A | TYR157 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | binding site for residue BOG D 401 |
| Chain | Residue |
| B | HIS21 |
| B | PHE23 |
| B | VAL334 |
| D | TYR98 |
| D | GLY159 |
| D | LYS160 |
| D | ASP172 |
| site_id | AC4 |
| Number of Residues | 9 |
| Details | binding site for residue BOG E 401 |
| Chain | Residue |
| A | HIS21 |
| A | PHE23 |
| A | VAL334 |
| A | GLY335 |
| E | TYR98 |
| E | TYR157 |
| E | GLY159 |
| E | LYS160 |
| E | ASP172 |
| site_id | AC5 |
| Number of Residues | 8 |
| Details | binding site for residue BOG E 402 |
| Chain | Residue |
| C | TYR98 |
| C | TYR157 |
| C | ASP172 |
| E | HIS21 |
| E | PHE23 |
| E | ASN35 |
| E | GLY36 |
| E | VAL334 |
| site_id | AC6 |
| Number of Residues | 9 |
| Details | binding site for residue BOG F 401 |
| Chain | Residue |
| D | HIS21 |
| D | PHE23 |
| D | VAL334 |
| F | TYR98 |
| F | ALA137 |
| F | TYR157 |
| F | GLY159 |
| F | LYS160 |
| F | ASP172 |
Functional Information from PROSITE/UniProt
| site_id | PS00576 |
| Number of Residues | 17 |
| Details | GRAM_NEG_PORIN General diffusion Gram-negative porins signature. FevGatYyFnKnmSTYV |
| Chain | Residue | Details |
| A | PHE295-VAL311 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1020 |
| Details | TRANSMEM: Beta stranded |
| Chain | Residue | Details |
| A | ALA1-LYS6 | |
| A | GLY184-ASP195 | |
| F | VAL292-PHE303 | |
| F | ASN306-ILE315 | |
| F | THR331-PHE340 | |
| A | ALA211-ALA222 | |
| A | ASN224-ARG235 | |
| A | LYS253-PHE265 | |
| A | GLY268-LYS281 | |
| A | VAL292-PHE303 | |
| A | ASN306-ILE315 | |
| A | THR331-PHE340 | |
| B | ALA1-LYS6 | |
| B | GLY8-PHE23 | |
| A | GLY8-PHE23 | |
| B | THR39-ILE51 | |
| B | ASP54-GLN66 | |
| B | LEU83-ALA91 | |
| B | GLY94-ARG100 | |
| B | GLY135-ASN141 | |
| B | GLY150-GLY159 | |
| B | ASP172-TYR182 | |
| B | GLY184-ASP195 | |
| B | ALA211-ALA222 | |
| B | ASN224-ARG235 | |
| A | THR39-ILE51 | |
| B | LYS253-PHE265 | |
| B | GLY268-LYS281 | |
| B | VAL292-PHE303 | |
| B | ASN306-ILE315 | |
| B | THR331-PHE340 | |
| C | ALA1-LYS6 | |
| C | GLY8-PHE23 | |
| C | THR39-ILE51 | |
| C | ASP54-GLN66 | |
| C | LEU83-ALA91 | |
| A | ASP54-GLN66 | |
| C | GLY94-ARG100 | |
| C | GLY135-ASN141 | |
| C | GLY150-GLY159 | |
| C | ASP172-TYR182 | |
| C | GLY184-ASP195 | |
| C | ALA211-ALA222 | |
| C | ASN224-ARG235 | |
| C | LYS253-PHE265 | |
| C | GLY268-LYS281 | |
| C | VAL292-PHE303 | |
| A | LEU83-ALA91 | |
| C | ASN306-ILE315 | |
| C | THR331-PHE340 | |
| D | ALA1-LYS6 | |
| D | GLY8-PHE23 | |
| D | THR39-ILE51 | |
| D | ASP54-GLN66 | |
| D | LEU83-ALA91 | |
| D | GLY94-ARG100 | |
| D | GLY135-ASN141 | |
| D | GLY150-GLY159 | |
| A | GLY94-ARG100 | |
| D | ASP172-TYR182 | |
| D | GLY184-ASP195 | |
| D | ALA211-ALA222 | |
| D | ASN224-ARG235 | |
| D | LYS253-PHE265 | |
| D | GLY268-LYS281 | |
| D | VAL292-PHE303 | |
| D | ASN306-ILE315 | |
| D | THR331-PHE340 | |
| E | ALA1-LYS6 | |
| A | GLY135-ASN141 | |
| E | GLY8-PHE23 | |
| E | THR39-ILE51 | |
| E | ASP54-GLN66 | |
| E | LEU83-ALA91 | |
| E | GLY94-ARG100 | |
| E | GLY135-ASN141 | |
| E | GLY150-GLY159 | |
| E | ASP172-TYR182 | |
| E | GLY184-ASP195 | |
| E | ALA211-ALA222 | |
| A | GLY150-GLY159 | |
| E | ASN224-ARG235 | |
| E | LYS253-PHE265 | |
| E | GLY268-LYS281 | |
| E | VAL292-PHE303 | |
| E | ASN306-ILE315 | |
| E | THR331-PHE340 | |
| F | ALA1-LYS6 | |
| F | GLY8-PHE23 | |
| F | THR39-ILE51 | |
| F | ASP54-GLN66 | |
| A | ASP172-TYR182 | |
| F | LEU83-ALA91 | |
| F | GLY94-ARG100 | |
| F | GLY135-ASN141 | |
| F | GLY150-GLY159 | |
| F | ASP172-TYR182 | |
| F | GLY184-ASP195 | |
| F | ALA211-ALA222 | |
| F | ASN224-ARG235 | |
| F | LYS253-PHE265 | |
| F | GLY268-LYS281 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 84 |
| Details | TOPO_DOM: Periplasmic |
| Chain | Residue | Details |
| A | ASP7 | |
| B | ASN52-SER53 | |
| B | ASP92-VAL93 | |
| B | SER142-ASP149 | |
| B | GLU183 | |
| B | ASN223 | |
| B | ASP266-PHE267 | |
| B | ASN304-LYS305 | |
| C | ASP7 | |
| C | ASN52-SER53 | |
| C | ASP92-VAL93 | |
| A | ASN52-SER53 | |
| C | SER142-ASP149 | |
| C | GLU183 | |
| C | ASN223 | |
| C | ASP266-PHE267 | |
| C | ASN304-LYS305 | |
| D | ASP7 | |
| D | ASN52-SER53 | |
| D | ASP92-VAL93 | |
| D | SER142-ASP149 | |
| D | GLU183 | |
| A | ASP92-VAL93 | |
| D | ASN223 | |
| D | ASP266-PHE267 | |
| D | ASN304-LYS305 | |
| E | ASP7 | |
| E | ASN52-SER53 | |
| E | ASP92-VAL93 | |
| E | SER142-ASP149 | |
| E | GLU183 | |
| E | ASN223 | |
| E | ASP266-PHE267 | |
| A | SER142-ASP149 | |
| E | ASN304-LYS305 | |
| F | ASP7 | |
| F | ASN52-SER53 | |
| F | ASP92-VAL93 | |
| F | SER142-ASP149 | |
| F | GLU183 | |
| F | ASN223 | |
| F | ASP266-PHE267 | |
| F | ASN304-LYS305 | |
| A | GLU183 | |
| A | ASN223 | |
| A | ASP266-PHE267 | |
| A | ASN304-LYS305 | |
| B | ASP7 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 756 |
| Details | TOPO_DOM: Extracellular |
| Chain | Residue | Details |
| A | SER24-MET38 | |
| B | GLY67-ARG82 | |
| B | ASN101-GLY134 | |
| B | LYS160-GLY171 | |
| B | ARG196-LYS210 | |
| B | ASN236-ASN252 | |
| B | ASP282-LEU291 | |
| B | ASN316-ASP330 | |
| C | SER24-MET38 | |
| C | GLY67-ARG82 | |
| C | ASN101-GLY134 | |
| A | GLY67-ARG82 | |
| C | LYS160-GLY171 | |
| C | ARG196-LYS210 | |
| C | ASN236-ASN252 | |
| C | ASP282-LEU291 | |
| C | ASN316-ASP330 | |
| D | SER24-MET38 | |
| D | GLY67-ARG82 | |
| D | ASN101-GLY134 | |
| D | LYS160-GLY171 | |
| D | ARG196-LYS210 | |
| A | ASN101-GLY134 | |
| D | ASN236-ASN252 | |
| D | ASP282-LEU291 | |
| D | ASN316-ASP330 | |
| E | SER24-MET38 | |
| E | GLY67-ARG82 | |
| E | ASN101-GLY134 | |
| E | LYS160-GLY171 | |
| E | ARG196-LYS210 | |
| E | ASN236-ASN252 | |
| E | ASP282-LEU291 | |
| A | LYS160-GLY171 | |
| E | ASN316-ASP330 | |
| F | SER24-MET38 | |
| F | GLY67-ARG82 | |
| F | ASN101-GLY134 | |
| F | LYS160-GLY171 | |
| F | ARG196-LYS210 | |
| F | ASN236-ASN252 | |
| F | ASP282-LEU291 | |
| F | ASN316-ASP330 | |
| A | ARG196-LYS210 | |
| A | ASN236-ASN252 | |
| A | ASP282-LEU291 | |
| A | ASN316-ASP330 | |
| B | SER24-MET38 |
Catalytic Information from CSA
| site_id | MCSA1 |
| Number of Residues | |
| Details | M-CSA 791 |
| Chain | Residue | Details |
| site_id | MCSA2 |
| Number of Residues | |
| Details | M-CSA 791 |
| Chain | Residue | Details |
| site_id | MCSA3 |
| Number of Residues | |
| Details | M-CSA 791 |
| Chain | Residue | Details |
| site_id | MCSA4 |
| Number of Residues | |
| Details | M-CSA 791 |
| Chain | Residue | Details |
| site_id | MCSA5 |
| Number of Residues | |
| Details | M-CSA 791 |
| Chain | Residue | Details |
| site_id | MCSA6 |
| Number of Residues | |
| Details | M-CSA 791 |
| Chain | Residue | Details |
