3FBB

Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with UDP

GO（遺伝子オントロジー）由来の情報

鎖名	GO（遺伝子オントロジー）id	名前空間	内容
A	0000166	molecular_function	nucleotide binding
A	0004550	molecular_function	nucleoside diphosphate kinase activity
A	0005524	molecular_function	ATP binding
A	0006183	biological_process	GTP biosynthetic process
A	0006228	biological_process	UTP biosynthetic process
A	0006241	biological_process	CTP biosynthetic process
A	0009117	biological_process	nucleotide metabolic process
A	0009142	biological_process	nucleoside triphosphate biosynthetic process
A	0016301	molecular_function	kinase activity
A	0016310	biological_process	phosphorylation
A	0016740	molecular_function	transferase activity
A	0046872	molecular_function	metal ion binding
B	0000166	molecular_function	nucleotide binding
B	0004550	molecular_function	nucleoside diphosphate kinase activity
B	0005524	molecular_function	ATP binding
B	0006183	biological_process	GTP biosynthetic process
B	0006228	biological_process	UTP biosynthetic process
B	0006241	biological_process	CTP biosynthetic process
B	0009117	biological_process	nucleotide metabolic process
B	0009142	biological_process	nucleoside triphosphate biosynthetic process
B	0016301	molecular_function	kinase activity
B	0016310	biological_process	phosphorylation
B	0016740	molecular_function	transferase activity
B	0046872	molecular_function	metal ion binding
C	0000166	molecular_function	nucleotide binding
C	0004550	molecular_function	nucleoside diphosphate kinase activity
C	0005524	molecular_function	ATP binding
C	0006183	biological_process	GTP biosynthetic process
C	0006228	biological_process	UTP biosynthetic process
C	0006241	biological_process	CTP biosynthetic process
C	0009117	biological_process	nucleotide metabolic process
C	0009142	biological_process	nucleoside triphosphate biosynthetic process
C	0016301	molecular_function	kinase activity
C	0016310	biological_process	phosphorylation
C	0016740	molecular_function	transferase activity
C	0046872	molecular_function	metal ion binding
D	0000166	molecular_function	nucleotide binding
D	0004550	molecular_function	nucleoside diphosphate kinase activity
D	0005524	molecular_function	ATP binding
D	0006183	biological_process	GTP biosynthetic process
D	0006228	biological_process	UTP biosynthetic process
D	0006241	biological_process	CTP biosynthetic process
D	0009117	biological_process	nucleotide metabolic process
D	0009142	biological_process	nucleoside triphosphate biosynthetic process
D	0016301	molecular_function	kinase activity
D	0016310	biological_process	phosphorylation
D	0016740	molecular_function	transferase activity
D	0046872	molecular_function	metal ion binding
E	0000166	molecular_function	nucleotide binding
E	0004550	molecular_function	nucleoside diphosphate kinase activity
E	0005524	molecular_function	ATP binding
E	0006183	biological_process	GTP biosynthetic process
E	0006228	biological_process	UTP biosynthetic process
E	0006241	biological_process	CTP biosynthetic process
E	0009117	biological_process	nucleotide metabolic process
E	0009142	biological_process	nucleoside triphosphate biosynthetic process
E	0016301	molecular_function	kinase activity
E	0016310	biological_process	phosphorylation
E	0016740	molecular_function	transferase activity
E	0046872	molecular_function	metal ion binding
F	0000166	molecular_function	nucleotide binding
F	0004550	molecular_function	nucleoside diphosphate kinase activity
F	0005524	molecular_function	ATP binding
F	0006183	biological_process	GTP biosynthetic process
F	0006228	biological_process	UTP biosynthetic process
F	0006241	biological_process	CTP biosynthetic process
F	0009117	biological_process	nucleotide metabolic process
F	0009142	biological_process	nucleoside triphosphate biosynthetic process
F	0016301	molecular_function	kinase activity
F	0016310	biological_process	phosphorylation
F	0016740	molecular_function	transferase activity
F	0046872	molecular_function	metal ion binding

PDBデータベースに由来する情報

site_id	AC1
残基数	4
詳細	BINDING SITE FOR RESIDUE MG A 202

鎖名	残基
A	ARG86
A	ASP115
A	HOH171
A	UDP201

---

site_id	AC2
残基数	13
詳細	BINDING SITE FOR RESIDUE UDP A 201

鎖名	残基
A	GLN89
A	ARG99
A	ILE106
A	GLY107
A	ASN109
A	HOH156
A	HOH171
A	MG202
A	LYS9
A	HIS53
A	TYR58
A	LEU62
A	ARG86

---

site_id	AC3
残基数	1
詳細	BINDING SITE FOR RESIDUE MG B 202

鎖名	残基
B	UDP201

---

site_id	AC4
残基数	12
詳細	BINDING SITE FOR RESIDUE UDP B 201

鎖名	残基
B	LYS9
B	TYR50
B	HIS53
B	TYR58
B	LEU62
B	ARG86
B	ARG99
B	ILE106
B	GLY107
B	ASN109
B	HOH147
B	MG202

---

site_id	AC5
残基数	3
詳細	BINDING SITE FOR RESIDUE MG C 202

鎖名	残基
C	ARG86
C	ASP115
C	UDP201

---

site_id	AC6
残基数	13
詳細	BINDING SITE FOR RESIDUE UDP C 201

鎖名	残基
C	LYS9
C	HIS53
C	TYR58
C	LEU62
C	ARG86
C	GLN89
C	ARG99
C	ILE106
C	GLY107
C	ASN109
C	HOH156
C	HOH165
C	MG202

---

site_id	AC7
残基数	2
詳細	BINDING SITE FOR RESIDUE MG D 202

鎖名	残基
D	ASP115
D	UDP201

---

site_id	AC8
残基数	11
詳細	BINDING SITE FOR RESIDUE UDP D 201

鎖名	残基
D	LYS9
D	HIS53
D	TYR58
D	LEU62
D	ARG86
D	ARG99
D	ILE106
D	GLY107
D	ASN109
D	HOH159
D	MG202

---

site_id	AC9
残基数	3
詳細	BINDING SITE FOR RESIDUE MG E 202

鎖名	残基
E	ARG86
E	ASP115
E	UDP201

---

site_id	BC1
残基数	11
詳細	BINDING SITE FOR RESIDUE UDP E 201

鎖名	残基
E	LYS9
E	HIS53
E	TYR58
E	LEU62
E	ARG86
E	ARG99
E	ILE106
E	GLY107
E	ASN109
E	HOH148
E	MG202

---

site_id	BC2
残基数	3
詳細	BINDING SITE FOR RESIDUE MG F 202

鎖名	残基
F	ARG86
F	ASP115
F	UDP201

---

site_id	BC3
残基数	10
詳細	BINDING SITE FOR RESIDUE UDP F 201

鎖名	残基
F	LYS9
F	HIS53
F	LEU62
F	ARG86
F	ARG99
F	ILE106
F	GLY107
F	ASN109
F	HOH158
F	MG202

---

UniProtにおけるモチーフ・データベースPROSITEからの機能情報

site_id	PS00469
残基数	9
詳細	NDPK Nucleoside diphosphate kinase (NDPK) active site signature. NliHASDSE

鎖名	残基	詳細
A	ASN109-GLU117

---

SwissProt/UniProtに記載されている蛋白質分子機能情報

site_id	SWS_FT_FI1
残基数	6
詳細	ACT_SITE: Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030

鎖名	残基	詳細
A	HIS112
B	HIS112
C	HIS112
D	HIS112
E	HIS112
F	HIS112

---

site_id	SWS_FT_FI2
残基数	30
詳細	BINDING:

鎖名	残基	詳細
A	LYS9
B	ASN109
C	LYS9
C	TYR58
C	ARG86
C	ARG99
C	ASN109
D	LYS9
D	TYR58
D	ARG86
D	ARG99
A	TYR58
D	ASN109
E	LYS9
E	TYR58
E	ARG86
E	ARG99
E	ASN109
F	LYS9
F	TYR58
F	ARG86
F	ARG99
A	ARG86
F	ASN109
A	ARG99
A	ASN109
B	LYS9
B	TYR58
B	ARG86
B	ARG99

---