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2ZIY

Crystal structure of squid rhodopsin

Functional Information from GO Data
ChainGOidnamespacecontents
A0004930molecular_functionG protein-coupled receptor activity
A0007186biological_processG protein-coupled receptor signaling pathway
A0007601biological_processvisual perception
A0016020cellular_componentmembrane
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE RET A 380
ChainResidue
APHE120
ACYS186
AMET204
APHE209
ATRP274
ALYS305

site_idAC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PLM A 381
ChainResidue
ACYS336

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PLM A 382
ChainResidue
ACYS337
ASER316
ACYS336

Functional Information from PROSITE/UniProt
site_idPS00237
Number of Residues17
DetailsG_PROTEIN_RECEP_F1_1 G-protein coupled receptors family 1 signature. MSImTMAMISIDRYNvI
ChainResidueDetails
AMET121-ILE137

site_idPS00238
Number of Residues17
DetailsOPSIN Visual pigments (opsins) retinal binding site. LPvMfAKASAihNPmiY
ChainResidueDetails
ALEU299-TYR315

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues77
DetailsTOPO_DOM: Extracellular => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518
ChainResidueDetails
AGLY2-VAL33
ALEU98-LYS109
AGLY173-SER199
AALA284-THR293

site_idSWS_FT_FI2
Number of Residues24
DetailsTRANSMEM: Helical; Name=1 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518
ChainResidueDetails
ATYR34-LEU58

site_idSWS_FT_FI3
Number of Residues66
DetailsTOPO_DOM: Cytoplasmic => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518
ChainResidueDetails
APHE59-ASN70
AASP132-ARG151
AMET225-LYS261

site_idSWS_FT_FI4
Number of Residues26
DetailsTRANSMEM: Helical; Name=2 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518
ChainResidueDetails
AMET71-PHE97

site_idSWS_FT_FI5
Number of Residues21
DetailsTRANSMEM: Helical; Name=3 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518
ChainResidueDetails
AVAL110-ILE131

site_idSWS_FT_FI6
Number of Residues20
DetailsTRANSMEM: Helical; Name=4 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518
ChainResidueDetails
AALA152-PHE172

site_idSWS_FT_FI7
Number of Residues24
DetailsTRANSMEM: Helical; Name=5 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518
ChainResidueDetails
AASN200-VAL224

site_idSWS_FT_FI8
Number of Residues21
DetailsTRANSMEM: Helical; Name=6 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518
ChainResidueDetails
AILE262-LEU283

site_idSWS_FT_FI9
Number of Residues21
DetailsTRANSMEM: Helical; Name=7 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518
ChainResidueDetails
APRO294-TYR315

site_idSWS_FT_FI10
Number of Residues1
DetailsMOD_RES: N6-(retinylidene)lysine => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518, ECO:0000269|PubMed:3191148, ECO:0007744|PDB:2Z73, ECO:0007744|PDB:4WW3
ChainResidueDetails
ALYS305

site_idSWS_FT_FI11
Number of Residues1
DetailsLIPID: S-palmitoyl cysteine => ECO:0000269|PubMed:18463093, ECO:0007744|PDB:2ZIY
ChainResidueDetails
ACYS336

site_idSWS_FT_FI12
Number of Residues1
DetailsLIPID: S-palmitoyl cysteine => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0007744|PDB:2ZIY
ChainResidueDetails
ACYS337

site_idSWS_FT_FI13
Number of Residues1
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000305|PubMed:18463093
ChainResidueDetails
AASN8

217705

数据于2024-03-27公开中

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