1SIE

MURINE POLYOMAVIRUS COMPLEXED WITH A DISIALYLATED OLIGOSACCHARIDE

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GO(遺伝子オントロジー)由来の情報

鎖名GO(遺伝子オントロジー)id名前空間内容
A0042025cellular_componenthost cell nucleus
A0039620cellular_componentT=7 icosahedral viral capsid
A0005198molecular_functionstructural molecule activity
A0075513biological_processcaveolin-mediated endocytosis of virus by host cell
A0019062biological_processvirion attachment to host cell
B0042025cellular_componenthost cell nucleus
B0039620cellular_componentT=7 icosahedral viral capsid
B0005198molecular_functionstructural molecule activity
B0075513biological_processcaveolin-mediated endocytosis of virus by host cell
B0019062biological_processvirion attachment to host cell
C0042025cellular_componenthost cell nucleus
C0039620cellular_componentT=7 icosahedral viral capsid
C0005198molecular_functionstructural molecule activity
C0075513biological_processcaveolin-mediated endocytosis of virus by host cell
C0019062biological_processvirion attachment to host cell
D0042025cellular_componenthost cell nucleus
D0039620cellular_componentT=7 icosahedral viral capsid
D0005198molecular_functionstructural molecule activity
D0075513biological_processcaveolin-mediated endocytosis of virus by host cell
D0019062biological_processvirion attachment to host cell
E0042025cellular_componenthost cell nucleus
E0039620cellular_componentT=7 icosahedral viral capsid
E0005198molecular_functionstructural molecule activity
E0075513biological_processcaveolin-mediated endocytosis of virus by host cell
E0019062biological_processvirion attachment to host cell
F0042025cellular_componenthost cell nucleus
F0039620cellular_componentT=7 icosahedral viral capsid
F0005198molecular_functionstructural molecule activity
F0075513biological_processcaveolin-mediated endocytosis of virus by host cell
F0019062biological_processvirion attachment to host cell
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PDBデータベースに由来する情報

site_id残基数詳細
AC17BINDING SITE FOR RESIDUE SIA A 384
鎖名残基
ATYR72
AARG77
AGLY78
ATHR291
AVAL296
AHIS298
AGAL385

AC24BINDING SITE FOR RESIDUE GAL A 385
鎖名残基
AGLY78
AASN93
ASIA384
ANAG386

AC32BINDING SITE FOR RESIDUE NAG A 386
鎖名残基
AGAL385
ASIA387

AC43BINDING SITE FOR RESIDUE SIA A 387
鎖名残基
ASER89
ALYS186
ANAG386

AC56BINDING SITE FOR RESIDUE SIA B 384
鎖名残基
BTYR72
BARG77
BTHR291
BVAL296
BHIS298
BGAL385

AC65BINDING SITE FOR RESIDUE GAL B 385
鎖名残基
BGLY78
BILE79
BASN93
BSIA384
BNAG386

AC72BINDING SITE FOR RESIDUE NAG B 386
鎖名残基
BGAL385
BSIA387

AC81BINDING SITE FOR RESIDUE SIA B 387
鎖名残基
BNAG386

AC95BINDING SITE FOR RESIDUE SIA C 384
鎖名残基
CTYR72
CARG77
CGLY78
CHIS298
CGAL385

BC13BINDING SITE FOR RESIDUE GAL C 385
鎖名残基
CGLY78
CSIA384
CNAG386

BC22BINDING SITE FOR RESIDUE NAG C 386
鎖名残基
CGAL385
CSIA387

BC31BINDING SITE FOR RESIDUE SIA C 387
鎖名残基
CNAG386

BC46BINDING SITE FOR RESIDUE SIA D 384
鎖名残基
DTYR72
DARG77
DVAL296
DHIS298
DGAL385
DNAG386

BC54BINDING SITE FOR RESIDUE GAL D 385
鎖名残基
DGLY78
DASN93
DSIA384
DNAG386

BC63BINDING SITE FOR RESIDUE NAG D 386
鎖名残基
DSIA384
DGAL385
DSIA387

BC71BINDING SITE FOR RESIDUE SIA D 387
鎖名残基
DNAG386

BC86BINDING SITE FOR RESIDUE SIA E 384
鎖名残基
ETYR72
EARG77
EGLY78
ETHR291
EHIS298
EGAL385

BC95BINDING SITE FOR RESIDUE GAL E 385
鎖名残基
EGLY78
EILE79
EASN93
ESIA384
ENAG386

CC12BINDING SITE FOR RESIDUE NAG E 386
鎖名残基
EGAL385
ESIA387

CC22BINDING SITE FOR RESIDUE SIA E 387
鎖名残基
ESER89
ENAG386

CC37BINDING SITE FOR RESIDUE SIA F 384
鎖名残基
FTYR72
FARG77
FGLY78
FTHR291
FVAL296
FHIS298
FGAL385

CC45BINDING SITE FOR RESIDUE GAL F 385
鎖名残基
FGLY78
FILE79
FASN93
FSIA384
FNAG386

CC52BINDING SITE FOR RESIDUE NAG F 386
鎖名残基
FGAL385
FSIA387

CC62BINDING SITE FOR RESIDUE SIA F 387
鎖名残基
FSER89
FNAG386

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「HETATM」原子の座標から抽出されたリガンド結合部位

site_id残基数詳細
SIA_1sie_A_3848O-SIALIC ACID binding site
鎖名残基ligand
ATYR72SIA: O-SIALIC ACID
AARG77-GLY78SIA: O-SIALIC ACID
ATHR291SIA: O-SIALIC ACID
AASN293SIA: O-SIALIC ACID
AVAL296SIA: O-SIALIC ACID
AHIS298SIA: O-SIALIC ACID
BASP85SIA: O-SIALIC ACID

GAL_1sie_A_3858BETA-D-GALACTOSE binding site
鎖名残基ligand
AARG77-ASN80GAL: BETA-D-GALACTOSE
AGLY91GAL: BETA-D-GALACTOSE
AASN93-THR94GAL: BETA-D-GALACTOSE
AVAL296GAL: BETA-D-GALACTOSE

SIA_1sie_A_3874O-SIALIC ACID binding site
鎖名残基ligand
AASN80SIA: O-SIALIC ACID
AGLU87SIA: O-SIALIC ACID
ASER89SIA: O-SIALIC ACID
ALYS186SIA: O-SIALIC ACID

SIA_1sie_E_3849O-SIALIC ACID binding site
鎖名残基ligand
AASP85SIA: O-SIALIC ACID
ETYR72SIA: O-SIALIC ACID
EARG77-GLY78SIA: O-SIALIC ACID
EARG289SIA: O-SIALIC ACID
ETHR291SIA: O-SIALIC ACID
EASN293SIA: O-SIALIC ACID
EVAL296SIA: O-SIALIC ACID
EHIS298SIA: O-SIALIC ACID

SIA_1sie_B_3848O-SIALIC ACID binding site
鎖名残基ligand
BTYR72SIA: O-SIALIC ACID
BARG77-GLY78SIA: O-SIALIC ACID
BTHR291SIA: O-SIALIC ACID
BASN293SIA: O-SIALIC ACID
BVAL296SIA: O-SIALIC ACID
BHIS298SIA: O-SIALIC ACID
CASP85SIA: O-SIALIC ACID

GAL_1sie_B_3858BETA-D-GALACTOSE binding site
鎖名残基ligand
BARG77-ASN80GAL: BETA-D-GALACTOSE
BGLY91GAL: BETA-D-GALACTOSE
BASN93-THR94GAL: BETA-D-GALACTOSE
BVAL296GAL: BETA-D-GALACTOSE

SIA_1sie_B_3874O-SIALIC ACID binding site
鎖名残基ligand
BASN80SIA: O-SIALIC ACID
BGLU87SIA: O-SIALIC ACID
BSER89SIA: O-SIALIC ACID
BGLY91SIA: O-SIALIC ACID

SIA_1sie_C_3849O-SIALIC ACID binding site
鎖名残基ligand
CTYR72SIA: O-SIALIC ACID
CARG77-GLY78SIA: O-SIALIC ACID
CARG289SIA: O-SIALIC ACID
CTHR291SIA: O-SIALIC ACID
CASN293SIA: O-SIALIC ACID
CVAL296SIA: O-SIALIC ACID
CHIS298SIA: O-SIALIC ACID
DASP85SIA: O-SIALIC ACID

GAL_1sie_C_3856BETA-D-GALACTOSE binding site
鎖名残基ligand
CARG77-ASN80GAL: BETA-D-GALACTOSE
CASN93-THR94GAL: BETA-D-GALACTOSE

SIA_1sie_C_3872O-SIALIC ACID binding site
鎖名残基ligand
CGLU87SIA: O-SIALIC ACID
CSER89SIA: O-SIALIC ACID

SIA_1sie_D_3849O-SIALIC ACID binding site
鎖名残基ligand
DTYR72SIA: O-SIALIC ACID
DARG77-GLY78SIA: O-SIALIC ACID
DARG289SIA: O-SIALIC ACID
DTHR291SIA: O-SIALIC ACID
DASN293SIA: O-SIALIC ACID
DVAL296SIA: O-SIALIC ACID
DHIS298SIA: O-SIALIC ACID
EASP85SIA: O-SIALIC ACID

GAL_1sie_D_3858BETA-D-GALACTOSE binding site
鎖名残基ligand
DARG77-ASN80GAL: BETA-D-GALACTOSE
DGLY91GAL: BETA-D-GALACTOSE
DASN93-THR94GAL: BETA-D-GALACTOSE
DVAL296GAL: BETA-D-GALACTOSE

GAL_1sie_E_3857BETA-D-GALACTOSE binding site
鎖名残基ligand
EARG77-ASN80GAL: BETA-D-GALACTOSE
EASN93-THR94GAL: BETA-D-GALACTOSE
EVAL296GAL: BETA-D-GALACTOSE

SIA_1sie_E_3874O-SIALIC ACID binding site
鎖名残基ligand
EASN80SIA: O-SIALIC ACID
EGLU87SIA: O-SIALIC ACID
ESER89SIA: O-SIALIC ACID
ELYS186SIA: O-SIALIC ACID

SIA_1sie_F_3847O-SIALIC ACID binding site
鎖名残基ligand
FTYR72SIA: O-SIALIC ACID
FARG77-GLY78SIA: O-SIALIC ACID
FTHR291SIA: O-SIALIC ACID
FASN293SIA: O-SIALIC ACID
FVAL296SIA: O-SIALIC ACID
FHIS298SIA: O-SIALIC ACID

GAL_1sie_F_3857BETA-D-GALACTOSE binding site
鎖名残基ligand
FARG77-ASN80GAL: BETA-D-GALACTOSE
FASN93-THR94GAL: BETA-D-GALACTOSE
FVAL296GAL: BETA-D-GALACTOSE

SIA_1sie_F_3873O-SIALIC ACID binding site
鎖名残基ligand
FGLU87SIA: O-SIALIC ACID
FSER89SIA: O-SIALIC ACID
FLYS186SIA: O-SIALIC ACID

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UniProtにおけるモチーフ・データベースPROSITEからの機能情報

site_id残基数詳細
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SwissProt/UniProtに記載されている蛋白質分子機能情報

site_id残基数詳細
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CSAにおける酵素触媒機能の情報

site_id残基数詳細