1RKD
E. COLI RIBOKINASE COMPLEXED WITH RIBOSE AND ADP
GO（遺伝子オントロジー）由来の情報
| 鎖名 | GO（遺伝子オントロジー）id | 名前空間 | 内容 |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0004747 | molecular_function | ribokinase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006014 | biological_process | D-ribose metabolic process |
| A | 0016301 | molecular_function | kinase activity |
| A | 0016310 | biological_process | phosphorylation |
| A | 0016740 | molecular_function | transferase activity |
| A | 0019303 | biological_process | D-ribose catabolic process |
| A | 0042803 | molecular_function | protein homodimerization activity |
| A | 0046835 | biological_process | carbohydrate phosphorylation |
| A | 0046872 | molecular_function | metal ion binding |
PDBデータベースに由来する情報
| site_id | AB1 |
| 残基数 | 4 |
| 詳細 | RESIDUES MAKING DIRECT HYDROGEN BONDS WITH ADP. |
| 鎖名 | 残基 |
| A | ASN187 |
| A | THR223 |
| A | GLY225 |
| A | ALA280 |
| site_id | AB2 |
| 残基数 | 7 |
| 詳細 | RESIDUES MAKING WATER-MEDIATED HYDROGEN BONDS WITH ADP. |
| 鎖名 | 残基 |
| A | ASN166 |
| A | ASN187 |
| A | GLU190 |
| A | THR223 |
| A | PHE243 |
| A | VAL245 |
| A | ALA280 |
| site_id | AB3 |
| 残基数 | 5 |
| 詳細 | RESIDUES WITHIN VAN DER WAALS DISTANCE OF ADP. |
| 鎖名 | 残基 |
| A | GLY225 |
| A | VAL245 |
| A | ALA253 |
| A | ALA282 |
| A | VAL286 |
| site_id | RB1 |
| 残基数 | 7 |
| 詳細 | RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE. |
| 鎖名 | 残基 |
| A | ASN14 |
| A | ASP16 |
| A | GLY42 |
| A | LYS43 |
| A | ASN46 |
| A | GLU143 |
| A | ASP255 |
| site_id | RB2 |
| 残基数 | 3 |
| 詳細 | RESIDUES MAKING WATER-MEDIATED HYDROGEN BONDS WITH RIBOSE. |
| 鎖名 | 残基 |
| A | ASP255 |
| A | ALA252 |
| A | GLY254 |
| site_id | RB3 |
| 残基数 | 5 |
| 詳細 | RESIDUES WITHIN VAN DER WAALS DISTANCE OF RIBOSE. |
| 鎖名 | 残基 |
| A | ALA98 |
| A | ILE100 |
| A | ILE110 |
| A | ILE112 |
| A | ILE251 |
UniProtにおけるモチーフ・データベースPROSITEからの機能情報
| site_id | PS00584 |
| 残基数 | 14 |
| 詳細 | PFKB_KINASES_2 pfkB family of carbohydrate kinases signature 2. DTiAAGDtfnGALI |
| 鎖名 | 残基 | 詳細 |
| A | ASP249-ILE262 |
SwissProt/UniProtに記載されている蛋白質分子機能情報
| site_id | SWS_FT_FI1 |
| 残基数 | 1 |
| 詳細 | ACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01987, ECO:0000305|PubMed:11786021 |
| 鎖名 | 残基 | 詳細 |
| A | ASP255 |
| site_id | SWS_FT_FI2 |
| 残基数 | 7 |
| 詳細 | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01987, ECO:0000269|PubMed:10438599, ECO:0000269|PubMed:11786021, ECO:0000269|PubMed:9519409 |
| 鎖名 | 残基 | 詳細 |
| A | GLY42 | |
| A | GLU143 | |
| A | ASN187 | |
| A | THR223 | |
| A | ASP255 | |
| A | HIS279 | |
| A | ASN14 |
| site_id | SWS_FT_FI3 |
| 残基数 | 6 |
| 詳細 | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01987, ECO:0000305|PubMed:11786021 |
| 鎖名 | 残基 | 詳細 |
| A | ILE251 | |
| A | ALA285 | |
| A | ARG288 | |
| A | GLY290 | |
| A | SER294 | |
| A | ASP249 |
| site_id | SWS_FT_FI4 |
| 残基数 | 1 |
| 詳細 | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01987, ECO:0000269|PubMed:10438599, ECO:0000269|PubMed:11786021 |
| 鎖名 | 残基 | 詳細 |
| A | GLY254 |
CSAにおける酵素触媒機能の情報
| site_id | MCSA1 |
| 残基数 | 4 |
| 詳細 | M-CSA 663 |
| 鎖名 | 残基 | 詳細 |
| A | ALA252 | electrostatic stabiliser, polar interaction |
| A | ALA253 | electrostatic stabiliser, polar interaction |
| A | GLY254 | electrostatic stabiliser, polar interaction |
| A | ASP255 | electrostatic stabiliser, proton acceptor, proton donor |
