6ND6
Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 24-ID-C |
| Synchrotron site | APS |
| Beamline | 24-ID-C |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-07-22 |
| Detector | DECTRIS PILATUS 6M-F |
| Wavelength(s) | 0.97950 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 210.050, 448.090, 621.490 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 224.045 - 2.850 |
| R-factor | 0.2522 |
| Rwork | 0.249 |
| R-free | 0.30470 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y4p |
| RMSD bond length | 0.003 |
| RMSD bond angle | 0.672 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.8.2) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 224.045 | 224.045 | 2.920 |
| High resolution limit [Å] | 2.850 | 12.750 | 2.850 |
| Rmerge | 0.188 | 0.019 | 1.375 |
| Rmeas | 0.224 | 0.023 | 1.656 |
| Total number of observations | 4480046 | ||
| Number of reflections | 1330642 | 15232 | 96222 |
| <I/σ(I)> | 6.8 | 35.65 | 0.85 |
| Completeness [%] | 98.8 | 95.3 | 97 |
| Redundancy | 3.367 | 3.296 | 3.109 |
| CC(1/2) | 0.989 | 0.999 | 0.122 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION | 7.6 | 292 | 0.1-0.2 M Arginine-HCl, 0.1M Tris-HCl pH 7.6, 2.5% PEG-20K, 7-12% MPD, 0.5 mM BME |
