6IH3
Crystal structure of Phosphite Dehydrogenase from Ralstonia sp. 4506 in complex with non-natural cofactor Nicotinamide Cytosine Dinucleotide
Experimental procedure
実験手法 | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-12-24 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 2 |
格子定数 [Å] | 97.770, 122.584, 61.662 |
格子定数 [度] | 90.00, 90.00, 90.00 |
精密化法
残基 | 45.408 - 1.942 |
R因子 | 0.1687 |
Rwork | 0.167 |
R-free | 0.20180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4e5m |
結合長の平均二乗偏差(RMSD) [Å] | 0.007 |
結合角の平均二乗偏差(RMSD) [度] | 0.889 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.13_2998: ???)) |
Quality characteristics
Overall | Outer shell | |
分解能 [Å] (低) | 45.410 | 2.010 |
分解能 [Å] (高) | 1.940 | 1.940 |
Rmerge_l_obs | 0.130 | 0.560 |
独立反射数 | 55297 | 5308 |
<I/σ(I)> | 15.05 | |
完全性 [%] | 99.7 | |
冗長性 | 12.7 |
結晶化条件
結晶ID | 方法 | pH | 温度 | 溶液条件 |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 289 | 0.2 M NaCl, 0.1 M Tris-HCl pH 8.0, 25% (w/v) PEG 3350 |