6H7A
Structure of Leishmania PABP1 (domain J).
Experimental procedure
実験手法 | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-05 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9760 |
Spacegroup name | P 65 |
格子定数 [Å] | 82.970, 82.970, 46.080 |
格子定数 [度] | 90.00, 90.00, 120.00 |
精密化法
残基 | 27.158 - 2.030 |
R因子 | 0.2027 |
Rwork | 0.201 |
R-free | 0.22490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3pth |
結合長の平均二乗偏差(RMSD) [Å] | 0.002 |
結合角の平均二乗偏差(RMSD) [度] | 0.423 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Quality characteristics
Overall | Outer shell | |
分解能 [Å] (低) | 30.000 | 2.103 |
分解能 [Å] (高) | 2.030 | 2.030 |
Rmerge_l_obs | 0.128 | 1.821 |
Rmeas | 0.132 | 1.868 |
Rpim | 0.030 | 0.419 |
独立反射数 | 11824 | 1175 |
<I/σ(I)> | 14.98 | |
完全性 [%] | 99.8 | 99.91 |
冗長性 | 19.9 | 19.8 |
CC(1/2) | 0.999 | 0.683 |
結晶化条件
結晶ID | 方法 | pH | 温度 | 溶液条件 |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 0.2 M ammonium sulphate, 0.1 M Sodium cacodylate at pH 6.5, 30% PEG8000 |