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6GGD

p53 cancer mutant Y220C in complex with small-molecule stabilizer PK9324

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I02
Synchrotron siteDiamond
BeamlineI02
Temperature [K]100
Detector technologyPIXEL
Collection date2015-09-26
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.97949
Spacegroup nameP 21 21 21
Unit cell lengths64.893, 71.247, 105.056
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.529 - 1.400
R-factor0.150074214253
Rwork0.149
R-free0.16997
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)2j1x
RMSD bond length0.005
RMSD bond angle0.777
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHENIX
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.5301.480
High resolution limit [Å]1.4001.400
Rmerge0.0500.520
Number of reflections96032
<I/σ(I)>14.52.9
Completeness [%]99.699.9
Redundancy4.74.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293Protein solution: 6 mg/ml protein in 25 mM sodium phosphate, ph 7.2, 150 mm KCl, 5 mm DTT. Reservoir buffer: 100 mm HEPES, pH 7.2, 19% (w/v) polyethylene glycol 4000, 5 mm DTT. Soaking buffer: Saturated solution of compound in 100 mm HEPES, ph 7.2, 10 mM sodium phosphate, ph 7.2, 19% (w/v) polyethylene glycol 4000, 20 % (v/v) glycerol, 150 mm KCl.

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數據於2024-04-24公開中

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