5VSL
Crystal structure of viperin with bound [4Fe-4S] cluster and S-adenosylhomocysteine (SAH)
Experimental procedure
実験手法 | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-12-18 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
格子定数 [Å] | 58.934, 73.854, 141.872 |
格子定数 [度] | 90.00, 90.00, 90.00 |
精密化法
残基 | 46.065 - 1.972 |
R因子 | 0.1571 |
Rwork | 0.155 |
R-free | 0.19970 |
Structure solution method | SAD |
結合長の平均二乗偏差(RMSD) [Å] | 0.015 |
結合角の平均二乗偏差(RMSD) [度] | 2.008 |
Data scaling software | HKL-2000 |
Phasing software | SHELXD |
Refinement software | PHENIX ((1.11.1_2575: 000)) |
Quality characteristics
Overall | Outer shell | |
分解能 [Å] (低) | 50.000 | 2.040 |
分解能 [Å] (高) | 1.970 | 1.970 |
Rmerge_l_obs | 0.079 | 0.578 |
独立反射数 | 42331 | 4223 |
<I/σ(I)> | 12.6 | 2.4 |
完全性 [%] | 95.0 | 96.7 |
冗長性 | 5.2 | 4.9 |
結晶化条件
結晶ID | 方法 | pH | 温度 | 溶液条件 |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 100 mM HEPES, pH 6.8 - 7.6, 10 - 30 % (w/v) PEG MME 2000, and 5 mM SAH |