5QRY
PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z2856434890
Experimental procedure
| 実験手法 | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-07-23 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91587 |
| Spacegroup name | P 41 2 2 |
| 格子定数 [Å] | 60.095, 60.095, 110.247 |
| 格子定数 [度] | 90.00, 90.00, 90.00 |
精密化法
| 残基 | 52.820 - 1.580 |
| R因子 | 0.2261 |
| Rwork | 0.225 |
| R-free | 0.25220 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6f58 |
| 結合長の平均二乗偏差(RMSD) [Å] | 0.012 |
| 結合角の平均二乗偏差(RMSD) [度] | 1.876 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.1) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Quality characteristics
| Overall | Inner shell | Outer shell | |
| 分解能 [Å] (低) | 52.780 | 52.780 | 1.620 |
| 分解能 [Å] (高) | 1.580 | 7.070 | 1.580 |
| Rmerge_l_obs | 0.067 | 0.046 | 1.653 |
| Rmeas | 0.070 | 0.048 | 1.752 |
| Rpim | 0.020 | 0.015 | 0.573 |
| Total number of observations | 335288 | 4096 | 19133 |
| 独立反射数 | 28526 | ||
| <I/σ(I)> | 17.9 | 48.7 | 1.1 |
| 完全性 [%] | 100.0 | 99.9 | 100 |
| 冗長性 | 11.8 | 10.1 | 9.3 |
| CC(1/2) | 0.999 | 0.997 | 0.756 |
結晶化条件
| 結晶ID | 方法 | pH | 温度 | 溶液条件 |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 298 | 0.1 M CdCl, 0.1 M Acetate pH 4.5, 32% PEG 400 |
