5KAI
NH3-bound RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 2.8 A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | FREE ELECTRON LASER |
Source details | SLAC LCLS BEAMLINE CXI |
Synchrotron site | SLAC LCLS |
Beamline | CXI |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2014-11-28 |
Detector | CS-PAD CXI-1 |
Wavelength(s) | 1.7492 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 117.911, 224.268, 330.996 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.570 - 2.800 |
R-factor | 0.250157325862 |
Rwork | 0.250 |
R-free | 0.29975 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PSII monomer composed of 4UB6 monomer and additional chain from 4PJ0 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.597 |
Data reduction software | cctbx.xfel |
Data scaling software | cctbx.prime |
Phasing software | PHASER |
Refinement software | PHENIX (dev_2411) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.570 | 43.570 | 2.848 |
High resolution limit [Å] | 2.800 | 7.600 | 2.800 |
Number of reflections | 213400 | ||
<I/σ(I)> | 11.62 | 58.786 | 1.935 |
Completeness [%] | 99.0 | 99.27 | 95.96 |
Redundancy | 13.7 | 55.65 | 4.17 |
CC(1/2) | 0.524 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 7.5 | 293 | Crystal growth was as described in Kern et al. 2005, Biochim. Biophys. Acta-Bioenergetics and Ibrahim et al. 2015, Struct. Dyn. 2 (4), 041705, substituting C12E8 for beta-DM and Betaine for glycerol |