5ENI
Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with compound-13 N11537 (SGC - Diamond I04-1 fragment screening)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-12-01 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9200 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 60.170, 91.400, 23.990 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.470 - 1.690 |
R-factor | 0.2195 |
Rwork | 0.217 |
R-free | 0.26490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3mb3 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.324 |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.11) |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.470 | 30.470 | 1.730 |
High resolution limit [Å] | 1.690 | 7.560 | 1.690 |
Rmerge | 0.034 | 0.017 | 0.850 |
Rpim | 0.015 | 0.008 | 0.347 |
Total number of observations | 99884 | 1159 | 7668 |
Number of reflections | 15419 | ||
<I/σ(I)> | 26.1 | 74 | 2.5 |
Completeness [%] | 99.2 | 97.7 | 99.4 |
Redundancy | 6.5 | 5.3 | 6.8 |
CC(1/2) | 1.000 | 1.000 | 0.866 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 0.1M HEPES pH 7.5 , 0.15M magnesium chloride , 32% PEG3350 |