5DGY
Crystal structure of rhodopsin bound to visual arrestin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-05-20 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 1.03317 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 107.484, 107.258, 460.314 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.978 - 7.700 |
R-factor | 0.2877 |
Rwork | 0.285 |
R-free | 0.33510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zwj |
RMSD bond length | 0.008 |
RMSD bond angle | 1.021 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 8.100 |
High resolution limit [Å] | 7.700 | 7.700 |
Rmerge | 0.314 | 1.188 |
Number of reflections | 6795 | |
<I/σ(I)> | 3.79 | 1.08 |
Completeness [%] | 97.5 | 0.908 |
Redundancy | 4.68 | 4.12 |
CC(1/2) | 1.000 | 0.810 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 5 | 293 | PEG400 |