Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1XXV

Yersinia YopH (residues 163-468) binds phosphonodifluoromethyl-Phe containing hexapeptide at two sites

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU300
Temperature [K]298
Detector technologyAREA DETECTOR
DetectorUCSD MARK III
Wavelength(s)1.5418
Spacegroup nameP 1
Unit cell lengths54.130, 47.170, 71.820
Unit cell angles104.45, 115.05, 89.97
Refinement procedure
Resolution50.000 - 2.500
Rwork0.178
R-free0.22900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)YopH (residues 163-468) with bound VO4 (not submitted to PDB)
RMSD bond length0.007
RMSD bond angle1.183
Data reduction softwareSDMS
Data scaling softwareSDMS
Phasing softwareMERLOT
Refinement softwareCNS
Data quality characteristics
 Overall
Low resolution limit [Å]50.000
High resolution limit [Å]2.500
Rmerge0.075
Number of reflections18319
Completeness [%]85.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.529810 mg/ml protein, 0.5 mM phosphonodifluoro-Phe-containing peptide in 1 mM imidazole. Precipitant: 22% polyethylene glycol (PEG) 4000, 8 mM MnCl2, 0.1% beta-mercaptoethanol, 100 mM Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K

218500

數據於2024-04-17公開中

PDB statisticsPDBj update infoContact PDBjnumon