1NDC
X-RAY STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE COMPLEXED WITH DTDP AND MG2+ AT 2 A RESOLUTION
Experimental procedure
Spacegroup name | H 3 2 |
Unit cell lengths | 79.800, 79.800, 160.600 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 16.000 - 2.000 |
R-factor | 0.183 |
Rwork | 0.183 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.600 |
Phasing software | X-PLOR |
Refinement software | X-PLOR |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 16.000 * |
High resolution limit [Å] | 2.000 * |
Rmerge | 0.068 * |
Total number of observations | 71549 * |
Number of reflections | 13562 * |
Completeness [%] | 99.6 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 18 * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | (mM) | ||
2 | 1 | drop | Tris-HCl | (mM) | |
3 | 1 | drop | MdTDP | (mM) | |
4 | 1 | drop | PEG6000 | 8 (%) | |
5 | 1 | reservoir | PEG6000 | 16 (%) | |
6 | 1 | drop | protein | 5 (mg/ml) |