1EJI
RECOMBINANT SERINE HYDROXYMETHYLTRANSFERASE (MOUSE)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE F1 |
Synchrotron site | CHESS |
Beamline | F1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 1999-05-07 |
Detector | ADSC QUANTUM 4 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 142.520, 142.520, 270.900 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.100 - 2.900 |
R-factor | 0.228 |
Rwork | 0.271 |
R-free | 0.27200 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | RABBIT SHMT (1CJ0) DIMER WITH 2 PLP COFACTORS. EACH MONOMER WAS MODIFIED BY: OMISSION OF RESIDUES 269-287 (IN THE HUMAN SHMT NUMBERING SCHEME; LABELED 241-250 IN THE 1CJ0 ENTRY) CONVERSION OF ALL MET RESIDUES TO SEMET AND CONVERSION TO ALANINE OF RESIDUES WHICH DIFFER BETWEEN RABBIT AND MOUSE I.E. RESIDUES 16 20 35 68 88 94 175 177 182 185 191 220 237 322 326 329 332 343 361 416 433 437-439 441-442 458 460 463 467 471 475 AND 477 IN THE HUMAN SHMT NUMBERING SCHEME. |
RMSD bond length | 0.008 |
RMSD bond angle | 1.400 |
Data reduction software | DPS |
Data scaling software | CCP4 ((SCALA)) |
Phasing software | AMoRE |
Refinement software | CNS (0.9) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 32.100 | 3.060 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.203 * | |
Total number of observations | 1046890 * | |
Number of reflections | 57974 | |
<I/σ(I)> | 3.4 | 0.3 |
Completeness [%] | 92.8 | 100 |
Redundancy | 10.6 | 10.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.7 | 295 | 8% PEG 8000, 6% ETHYLENE GLYCOL, 0.1 M HEPES, pH 7.7, VAPOR DIFFUSION, HANGING DROP, temperature 295.0K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | PEG8000 | 8 (%) | |
2 | 1 | drop | ethylene glycol | 6 (%) | |
3 | 1 | drop | HEPES | 0.1 (M) | |
4 | 1 | drop | (6S)-5-formylTHF | 0.200 (mM) | |
5 | 1 | drop | glycine | 100 (mM) | |
6 | 1 | drop | protein | 4 (mg/ml) |