Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1EJI

RECOMBINANT SERINE HYDROXYMETHYLTRANSFERASE (MOUSE)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE F1
Synchrotron siteCHESS
BeamlineF1
Temperature [K]100
Detector technologyCCD
Collection date1999-05-07
DetectorADSC QUANTUM 4
Spacegroup nameP 43 21 2
Unit cell lengths142.520, 142.520, 270.900
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution32.100 - 2.900
R-factor0.228
Rwork0.271
R-free0.27200

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)RABBIT SHMT (1CJ0) DIMER WITH 2 PLP COFACTORS. EACH MONOMER WAS MODIFIED BY: OMISSION OF RESIDUES 269-287 (IN THE HUMAN SHMT NUMBERING SCHEME; LABELED 241-250 IN THE 1CJ0 ENTRY) CONVERSION OF ALL MET RESIDUES TO SEMET AND CONVERSION TO ALANINE OF RESIDUES WHICH DIFFER BETWEEN RABBIT AND MOUSE I.E. RESIDUES 16 20 35 68 88 94 175 177 182 185 191 220 237 322 326 329 332 343 361 416 433 437-439 441-442 458 460 463 467 471 475 AND 477 IN THE HUMAN SHMT NUMBERING SCHEME.
RMSD bond length0.008
RMSD bond angle1.400
Data reduction softwareDPS
Data scaling softwareCCP4 ((SCALA))
Phasing softwareAMoRE
Refinement softwareCNS (0.9)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]32.1003.060
High resolution limit [Å]2.9002.900
Rmerge0.203

*

Total number of observations1046890

*

Number of reflections57974
<I/σ(I)>3.40.3
Completeness [%]92.8100
Redundancy10.610.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.72958% PEG 8000, 6% ETHYLENE GLYCOL, 0.1 M HEPES, pH 7.7, VAPOR DIFFUSION, HANGING DROP, temperature 295.0K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropPEG80008 (%)
21dropethylene glycol6 (%)
31dropHEPES0.1 (M)
41drop(6S)-5-formylTHF0.200 (mM)
51dropglycine100 (mM)
61dropprotein4 (mg/ml)

218500

數據於2024-04-17公開中

PDB statisticsPDBj update infoContact PDBjnumon