'## DATA LIST FOR SUPERPOSITION OF MOLECULES USED IN THE PAPER OF FKCOMBU (2014).## ## provided by Takeshi Kawabata (kawabata@protein.osaka-u.ac.jp) ## #COMMAND '/home/takawaba/work/kcombu/src/fpython/mkliginfo.py -L THR.liglist -of THR_ligands.txt -proname THR' #DATE '2014/05/01 14:47:48' #[1:receptor_protein_name] #[2:ligand_filename] [3:PDB_ID] [4:ligand 3-letter name] [5:ligand author_asym_id(chain_id)] #[6:ligand author_seq_id] [7:ligand label_asym_id] #[8:protein_filename] [9:protein author_asym_id(chain_id)] [10:protein label_asym_id] #[11:Nheavyatom] [12:Nrotbond] THR MDL_1ad8_1_E_1.pdb 1ad8 MDL H 250 E 1ad8_1_B_1.pdb H B 40 13 THR 163_1o0d_1_D_1.pdb 1o0d 163 H 248 D 1o0d_1_B_1.pdb H B 33 12 THR 9MQ_4ayv_1_D_1.pdb 4ayv 9MQ B 1258 D 4ayv_1_B_1.pdb B B 43 15 THR 10P_3qto_1_E_1.pdb 3qto 10P H 1001 E 3qto_1_B_1.pdb H B 27 8 THR 64U_3dux_1_D_1.pdb 3dux 64U H 901 D 3dux_1_B_1.pdb H B 27 8 THR T16_1a3e_1_D_1.pdb 1a3e T16 H 1 D 1a3e_1_B_1.pdb H B 35 17 THR DI2_1lhd_1_D_1.pdb 1lhd DI2 H 400 D 1lhd_1_B_1.pdb H B 31 14 THR RA8_1ypl_1_F_1.pdb 1ypl RA8 H 5555 F 1ypl_1_B_1.pdb H B 34 16 THR 162_1nzq_1_D_1.pdb 1nzq 162 H 248 D 1nzq_1_B_1.pdb H B 33 12 THR IH3_1c4y_1_D_1.pdb 1c4y IH3 2 370 D 1c4y_1_B_1.pdb 2 B 41 8 THR CCR_1ypk_1_D_1.pdb 1ypk CCR H 5555 D 1ypk_1_B_1.pdb H B 42 14 THR N12_2ank_1_D_1.pdb 2ank N12 H 501 D 2ank_1_A_1.pdb H A 34 13 THR IGN_1k21_1_G_1.pdb 1k21 IGN H 999 G 1k21_1_B_1.pdb H B 31 14 THR 34P_2feq_1_D_1.pdb 2feq 34P H 1 D 2feq_1_B_1.pdb H B 32 12 THR GR3_1awh_1_E_1.pdb 1awh GR3 B 1 E 1awh_1_B_1.pdb B B 39 9 THR DFK_3e6p_1_C_1.pdb 3e6p DFK H 301 C 3e6p_1_B_1.pdb H B 30 13 THR 19U_2zfp_1_F_1.pdb 2zfp 19U H 801 F 2zfp_1_B_1.pdb H B 22 7 THR C5M_2c8x_1_G_1.pdb 2c8x C5M B 1251 G 2c8x_1_B_1.pdb B B 35 11 THR 91U_3f68_1_D_1.pdb 3f68 91U H 901 D 3f68_1_B_1.pdb H B 30 10 THR 3SP_2fes_1_D_1.pdb 2fes 3SP H 1 D 2fes_1_B_1.pdb H B 32 12 THR 37U_2zdv_1_G_1.pdb 2zdv 37U H 501 G 2zdv_1_B_1.pdb H B 27 8 THR C4M_2c93_1_G_1.pdb 2c93 C4M B 1251 G 2c93_1_B_1.pdb B B 27 8 THR DI4_1lhf_1_D_1.pdb 1lhf DI4 H 400 D 1lhf_1_B_1.pdb H B 32 15 THR 16U_3dt0_1_D_1.pdb 3dt0 16U H 901 D 3dt0_1_B_1.pdb H B 23 8 THR I50_2r2m_1_D_1.pdb 2r2m I50 B 5000 D 2r2m_1_B_1.pdb B B 30 12 THR 701_2jh0_1_D_1.pdb 2jh0 701 D 1247 D 2jh0_1_B_1.pdb D B 29 8 THR M41_3rmn_1_E_1.pdb 3rmn M41 H 1 E 3rmn_1_B_1.pdb H B 35 12 THR 062_1zrb_1_C_1.pdb 1zrb 062 A 1001 C 1zrb_1_A_1.pdb A A 35 7 THR 06P_3qtv_1_E_1.pdb 3qtv 06P H 1001 E 3qtv_1_B_1.pdb H B 27 8 THR S04_3rmo_1_E_1.pdb 3rmo S04 H 1 E 3rmo_1_B_1.pdb H B 39 13 THR BM2_1bmm_1_D_1.pdb 1bmm BM2 H 1 D 1bmm_1_B_1.pdb H B 35 14 THR 32U_2zda_1_G_1.pdb 2zda 32U H 1000 G 2zda_1_B_1.pdb H B 29 9 THR 22U_2zc9_1_F_1.pdb 2zc9 22U H 1501 F 2zc9_1_B_1.pdb H B 27 8 THR SN3_2gde_1_E_1.pdb 2gde SN3 H 401 E 2gde_1_B_1.pdb H B 44 17 THR T15_3c1k_1_C_1.pdb 3c1k T15 A 403 C 3c1k_1_A_1.pdb A A 38 13 THR S33_3u9a_1_E_1.pdb 3u9a S33 H 1 E 3u9a_1_B_1.pdb H B 47 17 THR 99P_3p17_1_E_1.pdb 3p17 99P H 1001 E 3p17_1_B_1.pdb H B 26 8 THR P97_3sha_1_E_1.pdb 3sha P97 H 1 E 3sha_1_B_1.pdb H B 27 8 THR 02P_3qx5_1_I_1.pdb 3qx5 02P H 5 I 3qx5_1_B_1.pdb H B 28 8 THR 9MX_4ayy_1_D_1.pdb 4ayy 9MX B 1258 D 4ayy_1_B_1.pdb B B 41 12 THR P05_3sv2_1_E_1.pdb 3sv2 P05 H 1 E 3sv2_1_B_1.pdb H B 26 8 THR 21U_2zgb_1_F_1.pdb 2zgb 21U H 1801 F 2zgb_1_B_1.pdb H B 24 8 THR GR4_1awf_1_D_1.pdb 1awf GR4 H 1 D 1awf_1_B_1.pdb H B 52 13 THR 98P_3qwc_1_H_1.pdb 3qwc 98P H 2001 H 3qwc_1_B_1.pdb H B 28 8 THR 29U_2zgx_1_F_1.pdb 2zgx 29U H 1601 F 2zgx_1_B_1.pdb H B 24 8 THR T76_1nt1_1_C_1.pdb 1nt1 T76 A 247 C 1nt1_1_A_1.pdb A A 35 1 THR 165_1sb1_1_F_1.pdb 1sb1 165 H 1001 F 1sb1_1_B_1.pdb H B 39 11 THR B01_3shc_1_G_1.pdb 3shc B01 H 3 G 3shc_1_B_1.pdb H B 27 8 THR 23U_3dhk_2_D_1.pdb 3dhk 23U H 1601 D 3dhk_2_B_1.pdb H B 33 9 THR C7M_2c8w_1_E_1.pdb 2c8w C7M B 1249 E 2c8w_1_B_1.pdb B B 37 14 THR 157_1qhr_1_D_1.pdb 1qhr 157 B 500 D 1qhr_1_B_1.pdb B B 16 7 THR DP7_1lhc_1_D_1.pdb 1lhc DP7 H 400 D 1lhc_1_B_1.pdb H B 33 15 THR M31_3rml_1_E_1.pdb 3rml M31 H 1 E 3rml_1_B_1.pdb H B 32 11 THR 121_1ghy_1_I_1.pdb 1ghy 121 H 246 I 1ghy_1_B_1.pdb H B 19 4 THR 1TS_3utu_1_D_1.pdb 3utu 1TS H 901 D 3utu_1_B_1.pdb H B 47 17 THR T29_1a3b_1_D_1.pdb 1a3b T29 H 1 D 1a3b_1_B_1.pdb H B 34 16 THR 895_2jh5_1_F_1.pdb 2jh5 895 D 1249 F 2jh5_1_B_1.pdb D B 28 8 THR BM9_1bmn_1_D_1.pdb 1bmn BM9 H 1 D 1bmn_1_B_1.pdb H B 37 11 THR M34_3t5f_1_E_1.pdb 3t5f M34 H 1 E 3t5f_1_B_1.pdb H B 36 13 THR 53U_2zff_2_F_1.pdb 2zff 53U H 2001 F 2zff_2_B_1.pdb H B 26 8 THR 2CE_2bvs_1_D_1.pdb 2bvs 2CE H 1246 D 2bvs_1_A_1.pdb H A 37 19 THR 120_1ghv_1_E_1.pdb 1ghv 120 H 246 E 1ghv_1_B_1.pdb H B 19 4 THR GAH_1xm1_1_C_1.pdb 1xm1 GAH A 1001 C 1xm1_1_A_1.pdb A A 55 25 THR 13U_2zhe_1_F_1.pdb 2zhe 13U H 501 F 2zhe_1_B_1.pdb H B 30 9 THR 0KV_1ca8_1_F_1.pdb 1ca8 0KV B 248 F 1ca8_1_B_1.pdb B B 35 12 THR 696_1o2g_1_E_1.pdb 1o2g 696 H 410 E 1o2g_1_B_1.pdb H B 25 5 THR S00_3rm2_1_E_1.pdb 3rm2 S00 H 1 E 3rm2_1_B_1.pdb H B 39 13 THR MIU_1w7g_1_D_1.pdb 1w7g MIU H 300 D 1w7g_1_A_1.pdb H A 34 14 THR BT1_1d3t_1_G_1.pdb 1d3t BT1 B 400 G 1d3t_1_B_1.pdb B B 39 11 THR 00R_1d6w_1_E_1.pdb 1d6w 00R A 380 E 1d6w_1_A_1.pdb A A 37 8 THR 501_1zgv_1_C_1.pdb 1zgv 501 A 1001 C 1zgv_1_A_1.pdb A A 24 6 THR 14A_1t4v_1_D_1.pdb 1t4v 14A H 1411 D 1t4v_1_B_1.pdb H B 27 12 THR SHY_1vzq_1_D_1.pdb 1vzq SHY H 1256 D 1vzq_1_A_1.pdb H A 33 4 THR 27U_2zhq_1_F_1.pdb 2zhq 27U H 501 F 2zhq_1_B_1.pdb H B 28 9 THR BAB_1c1v_1_G_1.pdb 1c1v BAB H 410 G 1c1v_1_B_1.pdb H B 25 8 THR 5CB_2bvx_1_D_1.pdb 2bvx 5CB H 1246 D 2bvx_1_A_1.pdb H A 32 9 THR T42_1ai8_1_D_1.pdb 1ai8 T42 H 2 D 1ai8_1_B_1.pdb H B 42 16 THR I11_1uvs_1_C_1.pdb 1uvs I11 H 11 C 1uvs_1_B_1.pdb H B 32 12 THR AZL_1ae8_1_E_1.pdb 1ae8 AZL H 600 E 1ae8_1_B_1.pdb H B 30 15 THR 51U_2zf0_1_F_1.pdb 2zf0 51U H 501 F 2zf0_1_B_1.pdb H B 27 8 THR 110_1g37_1_C_1.pdb 1g37 110 A 900 C 1g37_1_A_1.pdb A A 40 14 THR 894_2jh6_1_F_1.pdb 2jh6 894 D 1249 F 2jh6_1_B_1.pdb D B 28 8 THR F25_2cn0_1_D_1.pdb 2cn0 F25 H 1246 D 2cn0_1_A_1.pdb H A 32 7 THR M32_3rmm_1_E_1.pdb 3rmm M32 H 1 E 3rmm_1_B_1.pdb H B 33 11 THR 00P_1d9i_1_E_1.pdb 1d9i 00P A 380 E 1d9i_1_A_1.pdb A A 33 8 THR 0NW_4e7r_1_H_1.pdb 4e7r 0NW H 302 H 4e7r_1_C_1.pdb H C 40 11 THR DI5_1lhg_1_D_1.pdb 1lhg DI5 H 400 D 1lhg_1_B_1.pdb H B 30 13 THR CDD_1mue_1_D_1.pdb 1mue CDD B 248 D 1mue_1_B_1.pdb B B 32 9 THR B03_3si3_1_I_1.pdb 3si3 B03 H 5 I 3si3_1_B_1.pdb H B 26 8 THR UIB_1ypj_1_D_1.pdb 1ypj UIB H 5555 D 1ypj_1_B_1.pdb H B 33 5 THR S54_3rm0_1_F_1.pdb 3rm0 S54 H 2 F 3rm0_1_B_1.pdb H B 35 12 THR N5N_4ax9_1_F_1.pdb 4ax9 N5N H 1246 F 4ax9_1_A_1.pdb H A 39 14 THR 81A_1t4u_1_D_1.pdb 1t4u 81A H 4815 D 1t4u_1_B_1.pdb H B 32 11 THR 130_1gj5_1_E_1.pdb 1gj5 130 H 410 E 1gj5_1_B_1.pdb H B 25 5 THR 45U_2zfq_1_F_1.pdb 2zfq 45U H 501 F 2zfq_1_B_1.pdb H B 27 9 THR B04_3si4_1_E_1.pdb 3si4 B04 H 1 E 3si4_1_B_1.pdb H B 27 8 THR 26U_2ziq_1_D_1.pdb 2ziq 26U H 701 D 2ziq_1_B_1.pdb H B 25 9 THR CDO_2anm_1_C_1.pdb 2anm CDO H 1001 C 2anm_1_A_1.pdb H A 33 12 THR C02_1ktt_1_D_1.pdb 1ktt C02 B 1 D 1ktt_1_B_1.pdb B B 30 6 THR DKK_3c27_1_D_1.pdb 3c27 DKK B 5000 D 3c27_1_B_1.pdb B B 31 13 THR UIP_1ype_1_F_1.pdb 1ype UIP H 5555 F 1ype_1_B_1.pdb H B 33 5 THR BZT_1d3d_1_G_1.pdb 1d3d BZT B 400 G 1d3d_1_B_1.pdb B B 38 9 THR 0BM_3tu7_1_D_1.pdb 3tu7 0BM H 1 D 3tu7_1_B_1.pdb H B 33 11 THR PRL_1bcu_1_D_1.pdb 1bcu PRL H 280 D 1bcu_1_B_1.pdb H B 16 0 THR BAH_1c1w_1_H_1.pdb 1c1w BAH H 410 H 1c1w_1_B_1.pdb H B 27 9 THR I25_2v3h_1_D_1.pdb 2v3h I25 H 1246 D 2v3h_1_A_1.pdb H A 31 11 THR S28_3rlw_1_E_1.pdb 3rlw S28 H 1 E 3rlw_1_B_1.pdb H B 32 11 THR ESI_1c5n_1_F_1.pdb 1c5n ESI H 522 F 1c5n_1_B_1.pdb H B 13 3 THR 132_1gj4_1_E_1.pdb 1gj4 132 H 410 E 1gj4_1_B_1.pdb H B 26 5 THR L17_1z71_1_C_1.pdb 1z71 L17 A 1001 C 1z71_1_A_1.pdb A A 33 9 THR 348_2cf9_1_D_1.pdb 2cf9 348 H 1247 D 2cf9_1_A_1.pdb H A 33 6 THR 33U_2zo3_1_D_1.pdb 2zo3 33U H 2501 D 2zo3_1_B_1.pdb H B 35 10 THR IH2_1c4v_1_E_1.pdb 1c4v IH2 2 370 E 1c4v_1_B_1.pdb 2 B 39 9 THR BLI_1jwt_1_B_1.pdb 1jwt BLI A 300 B 1jwt_1_A_1.pdb A A 34 9 THR ESH_2cf8_1_D_1.pdb 2cf8 ESH H 1246 D 2cf8_1_A_1.pdb H A 32 9 THR CDB_1mu8_1_D_1.pdb 1mu8 CDB B 248 D 1mu8_1_B_1.pdb B B 32 9 THR 4CP_2bvr_1_D_1.pdb 2bvr 4CP H 1246 D 2bvr_1_A_1.pdb H A 27 10 THR M4Z_4baq_1_E_1.pdb 4baq M4Z B 1287 E 4baq_1_B_1.pdb B B 33 13 THR DI3_1lhe_1_D_1.pdb 1lhe DI3 H 400 D 1lhe_1_B_1.pdb H B 33 15 THR 9MU_4az2_1_D_1.pdb 4az2 9MU B 1258 D 4az2_1_B_1.pdb B B 35 10 THR M18_3egk_2_D_1.pdb 3egk M18 H 601 D 3egk_2_B_1.pdb H B 28 11 THR BJA_3u98_1_E_1.pdb 3u98 BJA H 1 E 3u98_1_B_1.pdb H B 39 16 THR L86_1nm6_1_C_1.pdb 1nm6 L86 A 247 C 1nm6_1_A_1.pdb A A 36 2 THR BAI_1c1u_1_F_1.pdb 1c1u BAI H 410 F 1c1u_1_B_1.pdb H B 22 5 THR 170_1sl3_1_C_1.pdb 1sl3 170 A 1001 C 1sl3_1_A_1.pdb A A 37 10 THR 897_2uuk_1_F_1.pdb 2uuk 897 B 2250 F 2uuk_1_B_1.pdb B B 33 13 THR DFP_1p8v_1_F_1.pdb 1p8v DFP C 500 F 1p8v_1_C_1.pdb C C 10 4 THR NLI_3ldx_1_D_1.pdb 3ldx NLI H 1 D 3ldx_1_B_1.pdb H B 30 12 THR 24U_2zi2_1_F_1.pdb 2zi2 24U H 801 F 2zi2_1_B_1.pdb H B 23 8 THR BEN_3p70_3_W_1.pdb 3p70 BEN F 2001 W 3p70_3_F_1.pdb F F 9 1 THR C2D_2bxt_1_D_1.pdb 2bxt C2D H 1246 D 2bxt_1_A_1.pdb H A 31 9 THR R11_1g32_1_D_1.pdb 1g32 R11 B 1 D 1g32_1_B_1.pdb B B 32 6 THR TIF_3uwj_1_E_1.pdb 3uwj TIF H 302 E 3uwj_1_B_1.pdb H B 36 13 THR FSN_1oyt_1_F_1.pdb 1oyt FSN H 501 F 1oyt_1_B_1.pdb H B 30 4 THR NA9_2a2x_1_D_1.pdb 2a2x NA9 H 501 D 2a2x_1_B_1.pdb H B 32 13 THR ALZ_1afe_1_E_1.pdb 1afe ALZ H 600 E 1afe_1_B_1.pdb H B 24 11 THR 896_2uuj_1_F_1.pdb 2uuj 896 B 1250 F 2uuj_1_B_1.pdb B B 26 9 THR T87_1g30_1_D_1.pdb 1g30 T87 B 1 D 1g30_1_B_1.pdb B B 39 13 THR MEL_1k22_1_G_1.pdb 1k22 MEL H 999 G 1k22_1_B_1.pdb H B 31 11 THR MVF_4bao_1_E_1.pdb 4bao MVF B 1287 E 4bao_1_B_1.pdb B B 31 11 THR 31U_2znk_1_D_1.pdb 2znk 31U H 3001 D 2znk_1_B_1.pdb H B 26 9 THR CDA_1mu6_1_D_1.pdb 1mu6 CDA B 248 D 1mu6_1_B_1.pdb B B 31 9 THR M67_4bak_1_E_1.pdb 4bak M67 B 1287 E 4bak_1_B_1.pdb B B 34 14 THR T19_1aix_1_D_1.pdb 1aix T19 H 3 D 1aix_1_B_1.pdb H B 42 15 THR BMZ_1ghx_1_G_1.pdb 1ghx BMZ H 246 G 1ghx_1_B_1.pdb H B 19 4 THR IH1_1c4u_1_E_1.pdb 1c4u IH1 2 370 E 1c4u_1_B_1.pdb 2 B 36 9 THR C24_1kts_1_D_1.pdb 1kts C24 B 999 D 1kts_1_B_1.pdb B B 37 12 THR BT3_1d3p_1_G_1.pdb 1d3p BT3 B 400 G 1d3p_1_B_1.pdb B B 39 11 THR 382_1zgi_1_C_1.pdb 1zgi 382 A 1001 C 1zgi_1_A_1.pdb A A 32 7 THR M6S_4ban_1_E_1.pdb 4ban M6S B 1287 E 4ban_1_B_1.pdb B B 32 12 THR UNB_2bdy_1_D_1.pdb 2bdy UNB A 401 D 2bdy_1_A_1.pdb A A 36 9 THR MIN_1tom_1_D_1.pdb 1tom MIN H 1 D 1tom_1_B_1.pdb H B 28 9 THR S29_3rly_1_E_1.pdb 3rly S29 H 1 E 3rly_1_B_1.pdb H B 33 11 THR I26_2v3o_1_D_1.pdb 2v3o I26 H 1246 D 2v3o_1_A_1.pdb H A 32 11 THR MM9_4bam_1_E_1.pdb 4bam MM9 B 1287 E 4bam_1_B_1.pdb B B 33 12 THR C3M_2c8y_1_H_1.pdb 2c8y C3M B 1252 H 2c8y_1_B_1.pdb B B 26 7 THR RA4_1ypm_1_D_1.pdb 1ypm RA4 H 5555 D 1ypm_1_B_1.pdb H B 35 16 THR 10U_3biu_1_G_1.pdb 3biu 10U H 999 G 3biu_1_B_1.pdb H B 27 9 THR C1D_2bxu_1_D_1.pdb 2bxu C1D H 1246 D 2bxu_1_A_1.pdb H A 31 9 THR 44U_3da9_1_E_1.pdb 3da9 44U B 1 E 3da9_1_B_1.pdb B B 28 9 THR 50U_2zg0_1_F_1.pdb 2zg0 50U H 701 F 2zg0_1_B_1.pdb H B 28 9 THR APA_1aht_1_D_1.pdb 1aht APA H 401 D 1aht_1_B_1.pdb H B 15 4 THR L03_1wbg_1_D_1.pdb 1wbg L03 B 1248 D 1wbg_1_B_1.pdb B B 14 2 THR BAM_1c5o_1_E_1.pdb 1c5o BAM H 410 E 1c5o_1_B_1.pdb H B 9 3 THR C2A_2c8z_1_F_1.pdb 2c8z C2A B 1250 F 2c8z_1_B_1.pdb B B 9 1 THR BT2_1d3q_1_G_1.pdb 1d3q BT2 B 400 G 1d3q_1_B_1.pdb B B 38 11 THR L02_1way_1_D_1.pdb 1way L02 B 1248 D 1way_1_B_1.pdb B B 18 2 '