Pairwise fitting pdb-3j0f on pdb-3jb5 by gmfit










Pairwise fitting of target pdb-3j0f on reference pdb-3jb5 by gmfit(PID:1003).





RANK[1] Corr.Coeff:0.378

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

display:



color:



b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(pdb-3jb5)

display:



color:


b'CAPSID STRUCTURE OF THE PROPIONIBACTERIUM ACNES BACTERIOPHAGE         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.378
0.299
0.283
0.281
0.273
0.268
0.263
0.261
0.255
0.228







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jb5"(PDB-format) or 
 "3jb5"(mmCIF-format), and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.322025,0.145962,0.935412 42.307542 center 0,0,0 model #1
move 9.411280,-3.667868,-3.803158 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3jb5)]

[Download the target GMM(pdb 3j0f)]

[Download gmfit result file(1003)]