Pairwise fitting pdb-3j0f on pdb-3j0c by gmfit



Pairwise fitting of target pdb-3j0f on reference pdb-3j0c by gmfit(PID:4058511).

RANK[1] Corr.Coeff:0.904 [JSmol] [Molmil]
TARGET(pdb-3j0f)
display:
color:
b'SINDBIS VIRION ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3j0f)]
REFERENCE(pdb-3j0c)
display:
color:
b'MODELS OF E1, E2 AND CP OF VENEZUELAN EQUINE ENCEPHALITIS VIRUS TC-83 ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.904 0.482 0.419 0.350 0.334 0.303 0.303 0.294 0.290 0.269

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j0c"(PDB-format) or "3j0c"(mmCIF-format), and read it.
  2. Download the Target molecule "3j0f"(PDB-format) or "3j0f"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.984815,-0.170699,0.031636 148.625600 center 0,0,0 model #1
    move -5.527672,-5.015009,3.705735 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3j0c)] [Download the target GMM(pdb 3j0f)] [Download gmfit result file(4058511)]