Pairwise fitting pdb-3j0f on pdb-3iyi by gmfit



Pairwise fitting of target pdb-3j0f on reference pdb-3iyi by gmfit(PID:1275042).

RANK[1] Corr.Coeff:0.325 [JSmol] [Molmil]
TARGET(pdb-3j0f)
display:
color:
b'SINDBIS VIRION ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3j0f)]
REFERENCE(pdb-3iyi)
display:
color:
b'P22 EXPANDED HEAD COAT PROTEIN STRUCTURES REVEAL A NOVEL MECHANISM FOR' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.325 0.320 0.287 0.281 0.279 0.265 0.249 0.247 0.238 0.237

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3iyi"(PDB-format) or "3iyi"(mmCIF-format), and read it.
  2. Download the Target molecule "3j0f"(PDB-format) or "3j0f"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.266155,0.105916,0.958093 160.473928 center 0,0,0 model #1
    move -2.493630,84.894411,-27.626327 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!