Pairwise fitting pdb-3j0f on pdb-2yew by gmfit










Pairwise fitting of target pdb-3j0f on reference pdb-2yew by gmfit(PID:3664244).





RANK[1] Corr.Coeff:0.880

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

display:



color:



b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(pdb-2yew)

display:



color:


b'MODELING BARMAH FOREST VIRUS STRUCTURAL PROTEINS                      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.880
0.492
0.407
0.341
0.339
0.311
0.297
0.297
0.279
0.273







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2yew"(PDB-format) or 
 "2yew"(mmCIF-format), and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.265983,0.267360,0.926160 93.568597 center 0,0,0 model #1
move -3.459930,-2.200918,-7.676990 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!