Pairwise fitting pdb-3j0f on pdb-1gw7 by gmfit



Pairwise fitting of target pdb-3j0f on reference pdb-1gw7 by gmfit(PID:4129810).

RANK[1] Corr.Coeff:0.471 [JSmol] [Molmil]
TARGET(pdb-3j0f)
display:
color:
b'SINDBIS VIRION ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3j0f)]
REFERENCE(pdb-1gw7)
display:
color:
b'QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.471 0.342 0.338 0.335 0.326 0.325 0.323 0.320 0.319 0.315

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1gw7"(PDB-format) or "1gw7"(mmCIF-format), and read it.
  2. Download the Target molecule "3j0f"(PDB-format) or "3j0f"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.132133,-0.251923,-0.958685 47.765890 center 0,0,0 model #1
    move 4.264655,-165.667251,-56.005745 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 1gw7)] [Download the target GMM(pdb 3j0f)] [Download gmfit result file(4129810)]