Pairwise fitting pdb-3j0f on pdb-1gw7 by gmfit










Pairwise fitting of target pdb-3j0f on reference pdb-1gw7 by gmfit(PID:4129810).





RANK[1] Corr.Coeff:0.471

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

display:



color:



b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(pdb-1gw7)

display:



color:


b'QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.471
0.342
0.338
0.335
0.326
0.325
0.323
0.320
0.319
0.315







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1gw7"(PDB-format) or 
 "1gw7"(mmCIF-format), and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.132133,-0.251923,-0.958685 47.765890 center 0,0,0 model #1
move 4.264655,-165.667251,-56.005745 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 1gw7)]

[Download the target GMM(pdb 3j0f)]

[Download gmfit result file(4129810)]